Updated on 2026/08/14

写真a

 
NODA NATSUMI
 
Organization
Institute of Future Science Earth-Life Science Institute Researcher
Title
Researcher
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Education

  • The University of Tokyo   Graduate School of Science   Department of Earth and Planetary Science

    2017.4 - 2022.3

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    Country: Japan

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  • The University of Tokyo   Faculty of Science   Department of Earth and Planetary Physics

    2013.4 - 2017.3

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    Country: Japan

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Professional Memberships

  • The Biophysical Society of Japan

    2022.5

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  • The Geochemical Society of Japan

    2018.7

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  • American Geophysical Union

    2018.6

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  • The Japanese Society for Planetary Science

    2018.6

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  • Japan Geoscience Union

    2017.2

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Papers

  • Compositional selection of phospholipid compartments in icy environments drives the inheritance of encapsulated genetic information

    Tatsuya Shinoda, Natsumi Noda, Takayoshi Watanabe, Kazumu Kaneko, Yasuhito Sekine, Tomoaki Matsuura

    2025.4

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    Publisher:Cold Spring Harbor Laboratory  

    Abstract

    The lipid world hypothesis proposes that both intracellular componentsandthe chemical composition of the membrane compartment carry heritable information that contributes to protocellular fitness. However, there are few experimental demonstrations of membrane compositional selection and no study has shown that phospholipids—the primary membrane components of modern cells—can support selection of this type. As lipid compartments generally grow in size before fission, faster-growing compartments should enjoy a selective advantage that favors both the membrane itself and the contents it hosts. When situated in icy environments undergoing cycles of freezing and thawing (F/T), we found that the growth of phospholipid vesicles depends on their phospholipid composition: Vesicles with more unsaturated bonds in the acyl chain showed higher growth efficiency. When vesicles composed of lipids with either one or two unsaturated bonds were mixed and subjected to F/T cycles, a selective enrichment of the lipid with two unsaturated bonds was observed. Moreover, selection acting on lipid composition was propagated to the encapsulated genetic material, which was also enriched while selectively neutral. We conclude that phospholipid composition can be a direct target of selection for grown vesicles under an icy environment leading to indirect but concurrent enrichment of compartmentalized genetic molecules.

    DOI: 10.1101/2025.04.16.648126

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  • Hydrogen Generation From Ferrous Saponite in Reaction With H2S‐Containing Fluid: Relevance to Early Martian Habitability

    Natsumi Noda, Yasuhito Sekine, Yoshio Takahashi, Keisuke Fukushi, Hiroshi Sakuma, Takahiro Kawai, Mayuko Nakagawa, Norio Kitadai, Kristin Johnson‐Finn, Shawn Erin McGlynn

    Journal of Geophysical Research: Planets   130 ( 1 )   2024.12

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    Publishing type:Research paper (scientific journal)   Publisher:American Geophysical Union (AGU)  

    Abstract

    Molecular hydrogen is an important gas species for understanding the early Martian climate and redox chemistry. Through ancient aqueous alterations of crustal rocks, ferrous (Fe(II)) saponite formed abundantly on Mars. Subsequent intrusions of hydrothermal fluids may have resulted in a chemical reaction between the dissolved volatiles and the nearby rocks. Here we propose a new H2 generating reaction between ferrous saponite and H2S‐containing fluids, which is possible on early Mars. A series of hydrothermal experiments at a relatively low temperature of 90°C were performed under anoxic conditions using synthesized ferrous saponite to compare the resulting H2 concentration among various gas and fluid compositions. Based on the relationship with the existence of H2S, reaction time, fluid pH, dissolved iron concentration, and amount of minerals, we found that high levels of H2 (∼0.1 mmol/g ferrous saponite) were generated in the presence of H2S most rapidly in moderate pH conditions. Our microscopic chemical analysis of mineral phases suggested that ferrous saponite served as both the iron source of pyrite precipitation and the electron source to form H2. Our results suggest that intrusions of H2S‐containing fluids into the saponite‐containing crust of Mars would generate H2, which could potentially provide locally concentrated chemical energy for chemoautotrophic life.

    DOI: 10.1029/2024je008538

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  • Slow freeze‐thaw cycles enhanced hybridization of kilobase DNA with long complementary sticky ends Reviewed

    Natsumi Noda, Kohei Nomura, Naho Takahashi, Fumitaka Hashiya, Hiroshi Abe, Tomoaki Matsuura

    ChemSystemsChem   2024.5

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    Authorship:Lead author   Publishing type:Research paper (scientific journal)   Publisher:Wiley  

    The creation of large information molecules may have played an essential role in the origins of life. In this study, we conducted slow freeze‐thaw (F/T) experiments to test the possibility of enhanced hybridization between the complementary sticky ends attached to kilobase‐sized DNA fragments at sub‐nanomolar concentrations. DNA fragments of 2‐ and 3‐kilobase pairs (kbp) with 50‐base complementary sticky ends that can form 5 kbp‐sized hybridization products were mixed. While simple incubation provided little hybridization product, significantly effective hybridization was observed after freezing and thawing at a controlled time rate (<0.3 K min⁻¹), even with small DNA concentrations (<1 nM). Furthermore, slow thawing had a more effect on hybridization than slow freezing. The reaction efficiency was reduced by rapid thawing instead of slow thawing, suggesting that the eutectic phase concentration played an important role in hybridization. A slow F/T cycle was effective even for the hybridization reaction between two 10 kbp DNA fragments, which yielded a 20 kbp product at sub‐nanomolar concentrations. Repeating the slow F/T cycle significantly improved the reaction efficiency. The possible role of the F/T cycles in early Earth environments is discussed here.

    DOI: 10.1002/syst.202400025

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  • Rapid Aggregation and Dissolution of Organic Aerosols in Liquid Methane on Titan Reviewed

    Eito Hirai, Yasuhito Sekine, Naizhong Zhang, Natsumi Noda, Shuya Tan, Yoshio Takahashi, Hiroyuki Kagi

    Geophysical Research Letters   50 ( 12 )   2023.6

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    Publishing type:Research paper (scientific journal)   Publisher:American Geophysical Union (AGU)  

    DOI: 10.1029/2023gl103015

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  • Synthesis of ferrian and ferro-saponites: Implications for the structure of (Fe,Mg)-smectites formed under reduced conditions Reviewed

    Hiroshi Sakuma, Koki Morida, Yoshio Takahashi, Keisuke Fukushi, Natsumi Noda, Yasuhito Sekine, Kenji Tamura

    American Mineralogist   107 ( 10 )   1926 - 1935   2022.10

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:Mineralogical Society of America  

    Abstract

    Clay minerals are widely distributed on the surface of Earth, Mars, and Ceres in the solar systems. Among numerous clay minerals, smectites can record the history of the environment through the exchange of interlayer cations with those in water or through redox reactions with the atmosphere. Therefore, characterization of chemical compositions and crystal structures of smectites is crucial for revealing the paleoenvironment. For instance, the crystal structure within octahedral sheets of iron-bearing smectites changes to trioctahedral sheets under reduced or dioctahedral sheets under oxidizing conditions. Orbital infrared and X-ray diffraction (XRD) analyses by Mars orbiters/rovers revealed the presence of (Fe,Mg)-smectites on the surface of Mars; however, it has been difficult to characterize the properties of these (Fe,Mg)-smectites, which are rare on the surface of Earth. In this study, we synthesized ferrian (ferric ion-rich) and ferrous (ferrous ion-rich) (Fe,Mg)-saponite and revealed the effect of valence states and iron contents on the crystal structures. These saponites were synthesized using a hydrothermal method under reduced conditions. The crystal structures and valence states of iron were analyzed by XRD, Fourier-transform infrared spectroscopy, transmission electron microscopy, Mössbauer spectroscopy, and X-ray absorption near edge measurements. The synthesized clays were trioctahedral swelling clays and were identified as saponites. The valence state of iron in these synthesized saponites is altered by oxygen and a reducing agent in water; however, the trioctahedral structures are maintained under both oxidizing and reduced conditions, following a reversible reaction. This mechanism can be interpreted by the desorption and adsorption of hydrogen in the hydroxyls of the octahedral sheets of the smectite layers. The maximum basal spacing of the (02l) lattice plane in the octahedral sheets was defined by compiling various smectite data. When the basal spacing of (02l) is larger than the maximum in dioctahedral smectites, smectite can be identified as trioctahedral smectite. The redox state of iron in the octahedral sheet cannot be determined from the basal spacing of (02l). We revealed that the iron content in the trioctahedral sheet has a linear relationship with lattice parameter b. This provides a method to estimate the iron content in saponite from XRD data. The XRD profiles of smectites found at the Yellowknife Bay on Mars can be explained only by trioctahedral smectites, and the iron content in the octahedral sheet is roughly estimated to be 0.5–1.7 in a half-unit cell. These results indicate that the presence of (Fe,Mg)-saponite implies a reduced environment during the formation and that this iron-bearing saponite has both oxidation and reduction capabilities depending on the environment.

    DOI: 10.2138/am-2022-8231

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  • Characterization of groundwater chemistry beneath Gale Crater on early Mars by hydrothermal experiments Reviewed

    Natsumi Noda, Yasuhito Sekine, Shuya Tan, Sakiko Kikuchi, Takazo Shibuya, Minako Kurisu, Yoshio Takahashi, Keisuke Fukushi, Elizabeth B. Rampe

    Icarus   386   115149 - 115149   2022.6

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:Elsevier {BV}  

    DOI: 10.1016/j.icarus.2022.115149

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  • Anaerobic Microscopic Analysis of Ferrous Saponite and its Sensitivity to Oxidation by Earth’s Air: Lessons Learned for Analysis of Returned Samples from Mars and Carbonaceous Asteroids Reviewed

    Natsumi Noda, Shohei Yamashita, Takahashi Yoshio, Megumi Matsumoto, Yuma Enokido, Kana Amano, Takahiro Kawai, Hiroshi Sakuma, Keisuke Fukushi, Yasuhito Sekine, Tomoki Nakamura

    Minerals   11 ( 11 )   1244 - 1244   2021.11

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    Authorship:Lead author, Corresponding author   Publishing type:Research paper (scientific journal)   Publisher:MDPI AG  

    Ferrous saponite is a secondary mineral that can be used to reveal the redox state of past aqueous environments on Mars. In mineralogical analyses for ferrous saponite formed in laboratory simulations or contained in future returned samples from Mars, its oxidation by the Earth’s air could be problematic due to the high redox sensitivity. Here, we performed micro X-ray diffraction and scanning transmission X-ray microscopy analyses for a single particle of synthesized ferrous saponite without any exposure to air. The sample was reanalyzed after air exposure for 10–18 h to assess the adequacy of our anoxic preparation/measurement methods and the impacts of air on the sample. We found that the crystal structures agreed with ferrous saponite, both before and after air exposure; however, ferrous iron in saponite was partially oxidized, at least until 0.1–1 μm from the surface, after air exposure at the submicron scale, forming micro-vein-like Fe(III)-rich features. Together with our results of infrared spectroscopy of ferrous saponite, we showed that oxidation of octahedral iron occurred rapidly and heterogeneously, even in a short time of air exposure without any structural rearrangement. Since ferrous saponite is expected to exist on carbonaceous asteroids and icy dwarf planets, our methodology is also applicable to mineralogical studies of samples returned from these bodies.

    DOI: 10.3390/min11111244

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  • Highly Oxidizing Aqueous Environments on Early Mars Inferred From Scavenging Pattern of Trace Metals on Manganese Oxides Reviewed

    Natsumi Noda, Shoko Imamura, Yasuhito Sekine, Minako Kurisu, Keisuke Fukushi, Naoki Terada, Soichiro Uesugi, Chiya Numako, Yoshio Takahashi, Jens Hartmann

    Journal of Geophysical Research: Planets   124 ( 5 )   1282 - 1295   2019.5

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1029/2018je005892

    Web of Science

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  • マンガン酸化物と室内実験から示唆される初期火星の酸化的表層環境

    Natsumi Noda

    日本惑星科学会誌遊星人   2018.9

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    Language:Japanese   Publishing type:Research paper (scientific journal)  

    DOI: 10.14909/yuseijin.27.3_138

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Research Projects

  • 化学的非平衡環境が駆動するリボザイム進化の実験的検証

    Grant number:22KJ1296  2023.3 - 2025.3

    日本学術振興会  科学研究費助成事業  特別研究員奨励費

    野田 夏実

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    Grant amount:\5200000 ( Direct Cost: \4000000 、 Indirect Cost:\1200000 )

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  • 化学的非平衡環境が駆動するリボザイム進化の実験的検証

    Grant number:22J01277  2022.4 - 2025.3

    日本学術振興会  科学研究費助成事業 特別研究員奨励費  特別研究員奨励費

    野田 夏実

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    Grant amount:\5200000 ( Direct Cost: \4000000 、 Indirect Cost:\1200000 )

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  • 惑星や衛星の熱水環境がもたらすハビタビリティに関する研究

    Grant number:19J22396  2019.4 - 2022.3

    日本学術振興会  科学研究費助成事業 特別研究員奨励費  特別研究員奨励費

    野田 夏実

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    Grant amount:\3100000 ( Direct Cost: \3100000 )

    1. 初期火星地下の熱水岩石反応模擬実験および地下水循環シミュレーションの結果の国際学術誌への投稿:米国地球物理学連合が発行する国際誌であるJournal of Geophysical Research: Planets に投稿した。残念ながら非受理となったため、再投稿を目指してモデルの妥当性を示すための追加計算や解析方法の改良などを行った。
    2. 初期火星や小天体における還元剤生成反応や有機物合成反応を解明するための熱水実験システム及び分析手法の確立:貧酸素熱水実験システムを整備し、空気中の酸素の影響を防ぎながら実験や分析を行うことに成功した。また、ガスクロマトグラフィー質量分析計(GC-MS)や走査型透過X 線顕微鏡(STXM)を用いた生成物の分析手法を習得した。
    3. 初期火星や小天体の還元環境で熱水岩石反応に寄与しうる、二価鉄粘土鉱物の合成実験:粘土鉱物の合成に関して知見や設備が充実している物質・材料研究機構に研究生として訪問し、粘土鉱物の水熱合成手法を習得した。合成中の大気酸素による鉄酸化を防ぐため、酸素除去装置付きグローブボックスで達成される厳しい貧酸素環境下で、水熱合成から乾燥・分析までの全ての行程を大気に触れずに行える手順を構築した。生成物はX 線回折(XRD)分析、赤外分光(IR)分析、X線吸収微細構造(XAFS)分析、STXM 分析と複数の方法を全て嫌気的に行い、目的鉱物の構造が得られていること、二価鉄の全鉄に占める割合が約80%と非常に高い水準をとることを確かめた。
    4. 熱水-鉱物界面における有機物合成反応の室内実験の実施:3 で合成したサポナイトを使用し、2 で開発した手法のもと二価鉄サポナイトやその他の含鉄鉱物を用いた熱水岩石反応実験を60 通りの条件で実施し、生成物の分析を行った。

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