Updated on 2025/06/13

写真a

 
ISHII TOMOHIRO
 
Organization
Research Infrastructure Management Center Professor for Institute Management
Title
Professor for Institute Management
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Degree

  • Ph.D. ( The University of Tokyo )

Research Interests

  • optogenetics

  • vomeronasal olfaction

  • olfaction

  • mouse genetics

  • molecular biology

  • cell biology

Research Areas

  • Life Science / Neuroscience-general

  • Life Science / Molecular biology

  • Life Science / Cell biology  / optogenetics

  • Life Science / Laboratory animal science

Education

  • The University of Tokyo   Graduate School, Division of Science   Department of Biochemistry and Biophysics

    - 2001

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    Country: Japan

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  • The University of Tokyo   Faculty of Science   Department of Biophysics and Biochemistry

    - 1995

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    Country: Japan

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Research History

  • 東京科学大学   Research Infrastructure Management Center, Integrative Bioscience Facility   Professor for Institute Management

    2024.10

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    Country:Japan

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  • Tokyo Institute of Technology   Center for Integrative Biosciences   Professor for Institute Management

    2023.10 - 2024.9

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  • Tokyo Medical and Dental University   Graduate School of Medical and Dental Sciences Medical and Dental Sciences Bio-Matrix Cell Biology   Junior Associate Professor

    2016.4 - 2023.10

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  • Tokyo Medical and Dental University   Graduate School of Medical and Dental Sciences Medical and Dental Sciences Bio-Matrix Cell Biology   Assistant Professor

    2009.4 - 2016.3

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  • Max Planck Institute of Biophysics

    2007.12 - 2009.3

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  • The Rockefeller University   Department of Neurogenetics

    2001.4 - 2007.12

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Professional Memberships

Papers

  • Development of an optogenetics tool, Opto-RANK, for control of osteoclast differentiation using blue light Reviewed

    Aiko Takada, Toshifumi Asano, Ken-ichi Nakahama, Takashi Ono, Takao Nakata, Tomohiro Ishii

    Scientific Reports   14 ( 1 )   2024.1

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    Authorship:Corresponding author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:Springer Science and Business Media LLC  

    Abstract

    Optogenetics enables precise regulation of intracellular signaling in target cells. However, the application of optogenetics to induce the differentiation of precursor cells and generate mature cells with specific functions has not yet been fully explored. Here, we focused on osteoclasts, which play an important role in bone remodeling, to develop a novel optogenetics tool, Opto-RANK, which can manipulate intracellular signals involved in osteoclast differentiation and maturation using blue light. We engineered Opto-RANK variants, Opto-RANKc and Opto-RANKm, and generated stable cell lines through retroviral transduction. Differentiation was induced by blue light, and various assays were conducted for functional analysis. Osteoclast precursor cells expressing Opto-RANK differentiated into multinucleated giant cells on light exposure and displayed upregulation of genes normally induced in differentiated osteoclasts. Furthermore, the differentiated cells exhibited bone-resorbing activities, with the possibility of spatial control of the resorption by targeted light illumination. These results suggested that Opto-RANK cells differentiated by light possess the features of osteoclasts, both morphological and functional. Thus, Opto-RANK should be useful for detailed spatiotemporal analysis of intracellular signaling during osteoclast differentiation and the development of new therapies for various bone diseases.

    DOI: 10.1038/s41598-024-52056-w

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    Other Link: https://www.nature.com/articles/s41598-024-52056-w

  • Bacterial MgrB peptide activates chemoreceptor Fpr3 in mouse accessory olfactory system and drives avoidance behaviour. Reviewed

    Bernd Bufe, Yannick Teuchert, Andreas Schmid, Martina Pyrski, Anabel Pérez-Gómez, Janina Eisenbeis, Thomas Timm, Tomohiro Ishii, Günter Lochnit, Markus Bischoff, Peter Mombaerts, Trese Leinders-Zufall, Frank Zufall

    Nat Commun   10 ( 1 )   4889 - 4889   2019.10

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    Innate immune chemoreceptors of the formyl peptide receptor (Fpr) family are expressed by vomeronasal sensory neurons (VSNs) in the accessory olfactory system. Their biological function and coding mechanisms remain unknown. We show that mouse Fpr3 (Fpr-rs1) recognizes the core peptide motif f-MKKFRW that is predominantly present in the signal sequence of the bacterial protein MgrB, a highly conserved regulator of virulence and antibiotic resistance in Enterobacteriaceae. MgrB peptide can be produced and secreted by bacteria, and is selectively recognized by a subset of VSNs. Exposure to the peptide also stimulates VSNs in freely behaving mice and drives innate avoidance. Our data shows that Fpr3 is required for neuronal detection and avoidance of peptides derived from a conserved master virulence regulator of enteric bacteria.

    DOI: 10.1038/s41467-019-12842-x

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  • Subpopulations of vomeronasal sensory neurons with coordinated coexpression of type 2 vomeronasal receptor genes are differentially dependent on Vmn2r1. Reviewed

    Sachiko Akiyoshi, Tomohiro Ishii, Zhaodai Bai, Peter Mombaerts

    The European Journal of Neuroscience   47 ( 7 )   887 - 900   2018.4

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    The mouse vomeronasal organ is specialized in the detection of pheromones. Vomeronasal sensory neurons (VSNs) express chemosensory receptors of two large gene repertoires, V1R and V2R, which encode G-protein-coupled receptors. Phylogenetically, four families of V2R genes can be discerned as follows: A, B, C, and D. VSNs located in the basal layer of the vomeronasal epithelium coordinately coexpress V2R genes from two families: Approximately half of basal VSNs coexpress Vmn2r1 of family C with a single V2R gene of family A8-10, B, or D ('C1 type of V2Rs'), and the other half coexpress Vmn2r2 through Vmn2r7 of family C with a single V2R gene of family A1-6 ('C2 type V2Rs'). The regulatory mechanisms of the coordinated coexpression of V2Rs from two families remain poorly understood. Here, we have generated two mouse strains carrying a knockout mutation in Vmn2r1 by gene targeting in embryonic stem cells. These mutations cause a differential decrease in the numbers of VSNs expressing a given C1 type of V2R. There is no compensatory expression of Vmn2r2 through Vmn2r7. VSN axons coalesce into glomeruli in the appropriate region of the accessory olfactory bulb in the absence of Vmn2r1. Gene expression profiling by NanoString reveals a differential and graded decrease in the expression levels across C1 type of V2Rs. There is no change in the expression levels of C2 type of V2Rs, with two exceptions that we reclassified as C1 type. Thus, there appears to be a fixed probability of gene choice for a given C2 type of V2R.

    DOI: 10.1111/ejn.13875

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  • 細胞内カルシウムシグナルを光で操作する遺伝学ツールの開発

    石井 智浩, 佐藤 幸治, 角元 利行, 三浦 重徳, 東原 和成, 竹内 昌治, 中田 隆夫

    日本生化学会大会・日本分子生物学会年会合同大会講演要旨集   88回・38回   [1P0852] - [1P0852]   2015.12

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    Language:English   Publisher:(公社)日本生化学会  

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  • Light generation of intracellular Ca2+ signals by a genetically encoded protein BACCS Reviewed

    Tomohiro Ishii, Koji Sato, Toshiyuki Kakumoto, Shigenori Miura, Kazushige Touhara, Shoji Takeuchi, Takao Nakata

    NATURE COMMUNICATIONS   6   8021 - 8021   2015.8

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    DOI: 10.1038/ncomms9021

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  • A family of nonclassical class I MHC genes contributes to ultrasensitive chemodetection by mouse vomeronasal sensory neurons Reviewed

    Trese Leinders-Zufall, Tomohiro Ishii, Pablo Chamero, Philipp Hendrix, Livio Oboti, Andreas Schmid, Sarah Kircher, Martina Pyrski, Sachiko Akiyoshi, Mona Khan, Evelien Vaes, Frank Zufall, Peter Mombaerts

    Journal of Neuroscience   34 ( 15 )   5121 - 5133   2014

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:Society for Neuroscience  

    DOI: 10.1523/JNEUROSCI.0186-14.2014

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  • Genetic manipulation to analyze pheromone responses: knockouts of multiple receptor genes. Invited

    Tomohiro Ishii

    Methods in Molecular Biology   1068   133 - 154   2013

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    Gene targeting in the mouse is an essential technique to study gene function in vivo. Multigene families encoding vomeronasal receptor (VR) type 1 and type 2 consist of ~300 intact genes, which are clustered at multiple loci in the mouse genome. To understand the function of VRs and neurons expressing a particular VR in vivo, individual endogenous receptor genes can be manipulated by conventional gene targeting to create loss-of-function mutations or to visualize neurons and their axons expressing the VR. Multiple receptor genes in a cluster can also be deleted simultaneously by chromosome engineering, allowing analysis of function of a particular VR subfamily. Here, we describe protocols for conventional gene targeting and chromosome engineering for deleting a large genomic region in mouse embryonic stem (ES) cells.

    DOI: 10.1007/978-1-62703-619-1_10

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  • Coordinated coexpression of two vomeronasal receptor V2R genes per neuron in the mouse Reviewed

    Tomohiro Ishii, Peter Mombaerts

    MOLECULAR AND CELLULAR NEUROSCIENCE   46 ( 2 )   397 - 408   2011.2

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1016/j.mcn.2010.11.002

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  • Structural requirements for the activation of vomeronasal sensory neurons by MHC peptides Reviewed

    Trese Leinders-Zufall, Tomohiro Ishii, Peter Mombaerts, Frank Zufall, Thomas Boehm

    NATURE NEUROSCIENCE   12 ( 12 )   1551 - U98   2009.12

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    DOI: 10.1038/nn.2452

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  • Expression of nonclassical class I major histocompatibility genes defines a tripartite organization of the mouse vomeronasal system Reviewed

    Tomohiro Ishii, Peter Mombaerts

    JOURNAL OF NEUROSCIENCE   28 ( 10 )   2332 - 2341   2008.3

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    DOI: 10.1523/JNEUROSCI.4807-07.2008

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  • MHCとフェロモン. Invited

    石井智浩

    Annual Review 免疫 2006 (中外医学社)   2006

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    Language:Japanese   Publishing type:Research paper (scientific journal)  

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  • Non-equivalence of cloned and clonal mice Reviewed

    JS Li, T Ishii, DC Wen, P Mombaerts

    CURRENT BIOLOGY   15 ( 18 )   R756 - R757   2005.9

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1016/j.cub.2005.09.010

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  • Protocols for two- and three-color fluorescent RNA in situ hybridization of the main and accessory olfactory epithelia in mouse Reviewed

    T Ishii, M Omura, P Mombaerts

    JOURNAL OF NEUROCYTOLOGY   33 ( 6 )   657 - 669   2004.12

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    DOI: 10.1007/s11068-005-3334-y

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  • Odorant receptor gene choice is reset by nuclear transfer from mouse olfactory sensory neurons Reviewed

    JS Li, T Ishii, P Feinstein, P Mombaerts

    NATURE   428 ( 6981 )   393 - 399   2004.3

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    DOI: 10.1038/nature02433

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  • Combinatorial coexpression of neural and immune multigene families in mouse vomeronasal sensory neurons Reviewed

    T Ishii, J Hirota, P Mombaerts

    CURRENT BIOLOGY   13 ( 5 )   394 - 400   2003.3

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  • Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors Reviewed

    Rodriguez, I, K Del Punta, A Rothman, T Ishii, P Mombaerts

    NATURE NEUROSCIENCE   5 ( 2 )   134 - 140   2002.2

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    DOI: 10.1038/nn795

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  • Axonal projection of olfactory sensory neurons during the developmental and regeneration processes Reviewed

    S Sengoku, T Ishii, S Serizawa, H Nakatani, F Nagawa, A Tsuboi, H Sakano

    NEUROREPORT   12 ( 5 )   1061 - 1066   2001.4

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  • Monoallelic expresion of the odourant receptor gene and axonal projection of olfactory sensory neurones Reviewed

    T Ishii, S Serizawa, A Kohda, H Nakatani, T Shiroishi, K Okumura, Y Iwakura, F Nagawa, A Tsuboi, H Sakano

    GENES TO CELLS   6 ( 1 )   71 - 78   2001.1

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  • Mutually exclusive expression of odorant receptor transgenes Reviewed

    S Serizawa, T Ishii, H Nakatani, A Tsuboi, F Nagawa, M Asano, K Sudo, J Sakagami, H Sakano, T Ijiri, Y Matsuda, M Suzuki, T Yamamori, Y Iwakura, H Sakano

    NATURE NEUROSCIENCE   3 ( 7 )   687 - 693   2000.7

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    DOI: 10.1038/76641

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  • マウス嗅覚受容体遺伝子の相互排他的発現. Invited

    芹沢尚, 石井智浩, 中谷洋子, 坂野仁

    実験医学(羊土社)   18 ( 17 )   2000

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    Language:Japanese  

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  • Olfactory neurons expressing closely linked and homologous odorant receptor genes tend to project their axons to neighboring glomeruli on the olfactory bulb Reviewed

    A Tsuboi, S Yoshihara, N Yamazaki, H Kasai, H Asai-Tsuboi, M Komatsu, S Serizawa, T Ishii, Y Matsuda, F Nagawa, H Sakano

    JOURNAL OF NEUROSCIENCE   19 ( 19 )   8409 - 8418   1999.10

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  • olfactory receptor. Invited

    石井智浩, 坂野

    Molecular Medicine ノックアウトマウスデータブック(中山書店)   34 ( 臨時増刊号 )   1997

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    Language:Japanese  

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MISC

  • 光による骨組織構築に関わる細胞の分化制御

    石井智浩

    月刊細胞   56 ( 11 )   857 - 860   2024.10

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    Authorship:Lead author, Corresponding author   Language:Japanese  

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  • 新規光遺伝学ツールを用いた破骨細胞の分化誘導 Invited

    石井智浩

    月刊細胞   56 ( 9 )   702 - 705   2024.8

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  • Development and application of Ca2+ optogenetic tool Invited

    Tomohiro Ishii

    Brain Science Review 2018   31 - 50   2018.3

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    Language:Japanese   Publishing type:Article, review, commentary, editorial, etc. (scientific journal)   Publisher:KUBAPRO  

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  • Light manipulation of intracellular Ca2+ signals by a genetically encoded protein Invited

    Tomohiro Ishii, Takao Nakata

    Experimental Medicine   34 ( 4 )   601 - 606   2016.3

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    Language:Japanese   Publishing type:Article, review, commentary, editorial, etc. (scientific journal)   Publisher:Yodosha  

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  • フェロモンと受容体.

    石井智浩

    実験医学(羊土社)   26 ( 4 )   2008

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  • Coordinated coexpression of neural and immune molecules in the vomeronasal sensory system Invited

    Tomohiro Ishii

    22 ( 7 )   2003

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  • 二重標識したきゅう覚受容体トランスジーンとその内在性遺伝子に対する投射先の分離

    仙石慎太郎, 石井智浩, 芹沢尚, 中谷洋子, 坪井昭夫, 名川文清, 坂野仁

    日本神経科学大会プログラム・抄録集   23rd   2000

  • きゅう神経細胞の再生過程におけるきゅう覚受容体遺伝子の発現と軸索投射

    仙石慎太郎, 芹沢尚, 石井智浩, 中谷洋子, 坪井昭夫, 名川文清, 坂野仁

    日本分子生物学会年会プログラム・講演要旨集   21st   1998

  • YACトランスジェニックマウスを用いたきゅう覚受容体遺伝子の発現ときゅう神経軸索投射の解析

    芹沢尚, 石井智浩, 中谷洋子, 浅野雅秀, 仙石慎太郎, 坂野仁美, 鈴木操, 岩倉洋一郎, 坂野仁

    日本分子生物学会年会プログラム・講演要旨集   21st   1998

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Presentations

  • Development of an optogenetics tool, Opto-RANK, for control of osteoclast differentiation using blue light

    Tomohiro Ishii, Aiko Takada, Toshifumi Asano, Ken-ichi Nakahama, Takashi Ono, Takao Nakata

    2025.3 

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    Event date: 2025.3

    Presentation type:Oral presentation (general)  

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Industrial property rights

  • ポリペプチド、単離された核酸、組み換えベクター、遺伝子導入キット、形質転換体、および細胞内カルシウムシグナルの調整方法 (石井智浩)

    石井 智浩, 中田 隆夫

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    Applicant:国立大学法人東京医科歯科大学

    Application no:PCT/JP2012/053705  Date applied:2012.2

    Announcement no:WO2012111772 A1  Date announced:2012.8

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Research Projects

  • 新規光遺伝学ツールを用いた破骨細胞分化メカニズムの解明

    Grant number:21K05499  2021.4 - 2025.3

    日本学術振興会  科学研究費助成事業  基盤研究(C)

    石井 智浩, 中田 隆夫

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    Grant amount:\4160000 ( Direct Cost: \3200000 、 Indirect Cost:\960000 )

    本研究は破骨前駆細胞に光遺伝学ツールを導入し、光照射により細胞分化を誘導し成熟破骨細胞を作り出すことを目的としている。前年までの研究では、破骨前駆細胞に光遺伝学ツールを導入したOpto-RANK細胞を作成し、その細胞は光照射により形態的にも機能的にも成熟破骨細胞の特徴を有する細胞に分化することを示した。本年度は、更に詳細な解析を行うことでOpto-RANK細胞の特徴を明らかにした。
    まず、細胞分化の初期応答としてMAPキナーゼカスケードが活性化することが知られていることから、Opto-RANK細胞への光照射による2つのMAPキナーゼ(p38とERK)のリン酸化をウエスタンブロットによりタンパク質レベルで調べた。光照射の条件毎にリン酸化の強さやタイミングを測定し、Opto-RANK細胞の初期応答を光でコントロールできることが確かめられた。次に光照射により骨吸収を空間的にコントロールできるかどうかを確かめる実験を行った。基質となるリン酸カルシウムで培養プレートの表面をコートし、Opto-RANK細胞を培養した。培養プレートの半分を遮光して光照射を行ったところ、光が照射された半分の領域にだけリン酸カルシウムの吸収が観察された。最後に細胞分化の阻害因子であるオステオプロテゲリンによってOpto-RANK細胞の分化が阻害されないことを確かめ、Opto-RANK細胞の分化誘導系がオステオプロテゲリン非感受性であることを明らかにした。
    以上の結果は、Opto-RANK細胞の分化誘導を光により自在に操ることができそれにより局所的な骨吸収制御が可能であるということ、また生体内で応用した場合に内在性のオステオプロテゲリンによって分化抑制の影響を受けないことを示しており、細胞療法としての医学的な応用可能性が期待できる。
    本研究成果を論文にまとめ、Scientific Reportsに掲載された。

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  • 近赤外光に応答する光遺伝学ツールの開発

    2018 - 2020

    文部科学省/日本学術振興会  基盤研究(C)

    石井 智浩, 中田 隆夫, 石井 智浩

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    Authorship:Principal investigator  Grant type:Competitive

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  • マウスにおける機能的嗅覚神経ネットワークの同定

    2015 - 2017

    文部科学省/日本学術振興会  基盤研究(C)

    石井 智浩, 中田 隆夫, 石井 智浩

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    Authorship:Principal investigator  Grant type:Competitive

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  • Optogenetic study of multi functional signaling molecules such as RAC1 CDC42 and PI3K

    Grant number:25293042  2013.4 - 2016.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

    NAKATA TAKAO, INOUE AKIHIRO, ISHII TOMOHORO

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    Authorship:Collaborating Investigator(s) (not designated on Grant-in-Aid)  Grant type:Competitive

    Grant amount:\17940000 ( Direct Cost: \13800000 、 Indirect Cost:\4140000 )

    Actin cytoskeletons play an important role in cell structure, division,
    motility, development and signaling. Overexpression of the mutant GTPases as well as their gene-knock out studies revealed that RAC1 and CDC42 might regulate these processes, but cells might accommodate to the newsituation, resulting in less phenotypes. We performed acute-activation of photoactivatable (PA)-GTPases and observed the early phenotypes using life-act mCherry marker for F-actin in typical polygonal-shaped COS7 cells before/after light stimulation. RAC1 mainly acted on sides and formed laterally long lamellipodia (LP), while CDC42 polymerized actin filaments mainly at some vertexes (tips) of the cell and the actin bundles protrude into LP at the tips. Accordingly, the bundles were parallel to cell margins.

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  • マウス嗅神経細胞におけるカルシウムシグナルの光操作

    2012 - 2014

    文部科学省/日本学術振興会  基盤研究(C)

    石井 智浩, 石井 智浩

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  • Control of neural circuit formation using light-regulated adenylyl cyclase in vivo.

    Grant number:22700410  2010 - 2011

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Young Scientists (B)

    ISHII Tomohiro

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    Grant amount:\4030000 ( Direct Cost: \3100000 、 Indirect Cost:\930000 )

    To understand how cAMP is used to exert various functions in mouse olfactory sensory neurons(OSNs), we generated transgenic mice in which PAC, photo-activated adenylate cyclase, is expressed under the control of the mouse olfactory receptor promoter. PAC was detected throughout OSN including dendrites and axons, allowing local activation of PAC. We are currently analyzing the function of cAMP in neural circuit formation by regulating PAC activity using light.

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Teaching Experience

  • 組織学実習

    Institution:東京医科歯科大学

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  • 組織学

    Institution:東京医科歯科大学

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  • 頭頸部基礎

    Institution:東京医科歯科大学

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  • 細胞生物学

    Institution:東京医科歯科大学

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