Updated on 2025/08/18

写真a

 
KAWANISHI TORU
 
Organization
School of Life Science and Technology Assistant Professor
Title
Assistant Professor

Research Interests

  • 細胞集団運動

  • 組織伸長

  • ゼブラフィッシュ

  • メダカ

  • ライブイメージング

  • 体節

  • 形態形成

Research Areas

  • Life Science / Developmental biology

  • Life Science / Cell biology

Education

  • The University of Tokyo   Graduate School of Science   Department of Biological Sciences

    2010.4 - 2014.3

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    Country: Japan

  • The University of Tokyo   Graduate School of Science   Department of Biological Sciences

    2008.4 - 2010.3

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    Country: Japan

  • The University of Tokyo   Faculty of Science   Department of Biological Sciences

    2006.4 - 2008.3

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    Country: Japan

  • The University of Tokyo   College of Arts and Sciences

    2004.4 - 2006.3

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    Country: Japan

Research History

  • Institute of Science Tokyo   Assistant Professor

    2024.10

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    Country:Japan

  • Tokyo Institute of Technology   Assistant Professor

    2022.10 - 2024.9

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    Country:Japan

  • The University of Tokyo   Graduate School of Science   Specially Appointed Junior Associate Professor

    2019.3 - 2022.9

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    Country:Japan

  • Harvard Medical School   Department of Systems Biology   Researcher

    2016.4 - 2019.3

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    Country:United States

  • RIKEN

    2014.4 - 2016.3

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    Country:Japan

  • Japan Society for the Promotion of Science

    2010.4 - 2013.3

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    Country:Japan

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Papers

  • A knock-in zebrafish reporter line for live visualization of endogenous Olig2 protein dynamics Reviewed International journal

    Chia-Teng Chang, Toru Kawanishi, Sandy Nandagopal, Sean Gregory Megason, Tony Yu-Chen Tsai

    Zebrafish   (in press)   2025.12

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)  

  • Formation control between leader and migratory follower tissues allows coordinated growth Reviewed International coauthorship International journal

    Toru Kawanishi, Takamichi Sushida, Tony Yu-Chen Tsai, Hiroyuki Takeda, Sean Gregory Megason

    Science Advances   11   eads2310   2025.7

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1126/sciadv.ads2310

  • Chemical-induced heart defects using a transgenic zebrafish model Reviewed International journal

    Shujie Liu, Toru Kawanishi, Atsuko Shimada, Yuko Nukada, Masaaki Miyazawa, Hiroyuki Takeda, Junichi Tasaki

    Toxicological Sciences   kfaf083   2025.6

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    Language:English   Publishing type:Research paper (scientific journal)  

    Congenital heart defects (CHDs) are common birth defects attributed to genetic and environmental factors such as pharmaceuticals and chemicals. Identifying modifiable environmental factors and understanding their impact on heart development is crucial for mitigating chemical-induced CHDs. Given the increasing number of chemical agents, efficient high-throughput systems are essential to evaluate their teratogenic potential during cardiovascular development, which is a major concern for chemical safety. In this study, we developed three transgenic zebrafish reporter lines, myl7: EGFP, kdrl: MRFP and gata1: MKate2, which enable real-time visualization of myocardial and endocardial development and cardiac function based on blood flow. These transgenic embryos were used to investigate the teratogenic effects of chemicals well known to induce heart defects in mammals, including humans. Our real-time imaging revealed that the teratogens induced significant malformations in cardiac morphogenesis, including abnormal heart tube formation, incomplete cardiac looping, and reduced heart chamber size. These teratogens also disrupted the expression of cardiac progenitor markers, suggesting impaired cardiac progenitor development. These defects were detected at the early stages (4-48 hours post-fertilization), suggesting that the stages of progenitor development to heart looing were most susceptible to teratogen exposure, ie the critical period for teratogen-induced heart defects. Functional defects, such as impaired blood flow, were observed using real-time imaging of the gata1-reporter line. This study demonstrates the utilization of transgenic zebrafish embryo models for high-throughput teratogenicity testing, which also allows us to analyze the mechanisms underlying chemical-induced heart defects. Therefore, our zebrafish models would contribute to the identification and reduction of risks associated with CHDs.

    DOI: 10.1093/toxsci/kfaf083

    PubMed

  • Dorsoventral patterning beyond the gastrulation stage: Interpretation of early dorsoventral cues and modular development mediated by zic1/zic4 Invited Reviewed International journal

    Toru Kawanishi, Hiroyuki Takeda

    Cells & Development   204012 - 204012   2025.2

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)  

    Dorsoventral (DV) patterning is fundamental to vertebrate development, organizing the entire body across different germ layers. Although early DV axis formation, centered on the Spemann-Mangold organizer through the BMP activity gradient, has been extensively studied, the mechanisms shaping DV traits during later development remain largely unexplored. In this review, we highlight recent findings, especially from studies involving the Double anal fin (Da) spontaneous mutant of the small teleost medaka (Oryzias latipes), focusing on the roles of zic1 and zic4 (zic1/zic4) in regulating late DV patterning. These genes establish the dorsal domain of the trunk by converting the initial BMP gradient into distinct on/off spatial compartments within somites and their derivatives, acting as selector genes that define dorsal-specific traits, including myotome structure, body shape, and dorsal fin development. We also discuss how the zic-mediated dorsal domain is established and maintained from embryogenesis through adulthood. Furthermore, we provide evidence that zic-dependent action on the dorsal characteristics is dosage-dependent. We propose that the zic1/zic4-mediated DV patterning mechanism may represent a conserved regulatory framework that has been adapted to support the diverse body plans observed across vertebrate species.

    DOI: 10.1016/j.cdev.2025.204012

    PubMed

  • Twisted cell flow facilitates three-dimensional somite morphogenesis in zebrafish Reviewed International journal

    Harunobu Kametani, Yue Tong, Atsuko Shimada, Hiroyuki Takeda, Takamichi Sushida, Masakazu Akiyama, Toru Kawanishi

    Cells & Development   180   203969 - 203969   2024.12

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    Authorship:Last author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)  

    Tissue elongation is a fundamental morphogenetic process to construct complex embryonic structures. In zebrafish, somites rapidly elongate in both dorsal and ventral directions, transforming from a cuboidal to a V-shape within a few hours of development. Despite its significance, the cellular behaviors that directly lead to somite elongation have not been examined at single-cell resolution. Here, we describe the motion and shapes of all cells composing the dorsal half of the somite in three-dimensional space using lightsheet microscopy. We identified two types of cell movements-in horizontal and dorsal directions-that occur simultaneously within individual cells, creating a complex, twisted flow of cells during somite elongation. Chemical inhibition of Sdf1 signaling disrupted the collective movement in both directions and inhibited somite elongation, suggesting that Sdf1 signaling is crucial for this cell flow. Furthermore, three-dimensional computational modeling suggested that horizontal cell rotation accelerates the perpendicular elongation of the somite along the dorsoventral axis. Together, our study offers novel insights into the role of collective cell migration in tissue morphogenesis, which proceeds dynamically in the three-dimensional space of the embryo.

    DOI: 10.1016/j.cdev.2024.203969

    PubMed

  • Immobilization secondary to cell death of muscle precursors with a dual transcriptional signature contributes to the emu wing skeletal pattern Reviewed International journal

    Eriko Tsuboi, Satomi F Ono, Ingrid Rosenburg Cordeiro, Reiko Yu, Toru Kawanishi, Makoto Koizumi, Shuji Shigenobu, Guojun Sheng, Masataka Okabe, Mikiko Tanaka

    Nature Communications   15 ( 1 )   8153 - 8153   2024.9

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    Language:English   Publishing type:Research paper (scientific journal)  

    Limb reduction has occurred multiple times in tetrapod history. Among ratites, wing reductions range from mild vestigialization to complete loss, with emus (Dromaius novaehollandiae) serving as a model for studying the genetic mechanisms behind limb reduction. Here, we explore the developmental mechanisms underlying wing reduction in emu. Our analyses reveal that immobilization resulting from the absence of distal muscles contributes to skeletal shortening, fusion and left-right intraindividual variation. Expression analysis and single cell-RNA sequencing identify muscle progenitors displaying a dual lateral plate mesodermal and myogenic signature. These cells aggregate at the proximal region of wing buds and undergo cell death. We propose that this cell death, linked to the lack of distal muscle masses, underlines the morphological features and variability in skeletal elements due to reduced mechanical loading. Our results demonstrate that differential mobility during embryonic development may drive morphological diversification in vestigial structures.

    DOI: 10.1038/s41467-024-52203-x

    PubMed

  • Zic genes in teleosts: Their roles in dorsoventral patterning in the somite Invited Reviewed International journal

    Kota Abe, Toru Kawanishi, Hiroyuki Takeda

    Advances in Experimental Medicine and Biology   1046   141 - 156   2018

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    Language:English   Publishing type:Research paper (scientific journal)  

    The medaka contains seven zic genes, two of which, zic1 and zic4, have been studied extensively. The analyses are mainly based on the double anal fin (Da) mutant, which was isolated from the wild. Da is an enhancer mutant of zic1/zic4, and the expression of zic1/zic4 is specifically lost in the dorsal half of the somites, which leads to a mirror-image duplication of the ventral half across the lateral midline from larva to adult. The studies of medaka Da give us important insights into the function of zic1/zic4 in mesodermal tissues and also the mechanism of dorsoventral patterning in the vertebrate trunk region occurring during late development, which is a long-standing mystery in developmental biology. In this chapter, we introduce genomic organization of medaka zic genes and discuss their function, mainly focusing on zic1 and zic4 in dorsoventral patterning of the trunk region and possible connections to human congenital disorders.

    DOI: 10.1007/978-981-10-7311-3_8

    PubMed

  • Modular development of the teleost trunk along the dorsoventral axis and zic1/zic4 as selector genes in the dorsal module Reviewed International journal

    Toru Kawanishi, Takuya Kaneko, Yuuta Moriyama, Masato Kinoshita, Hayato Yokoi, Tohru Suzuki, Atsuko Shimada, Hiroyuki Takeda

    Development   140 ( 7 )   1486 - 96   2013.4

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)  

    Teleost fish exhibit remarkable diversity in morphology, such as fins and coloration, particularly on the dorsal side. These structures are evolutionary adaptive because their back is highly visible to other individuals. However, owing to the late phenotypic appearance (from larva to adult) and lack of appropriate mutants, the genetic mechanisms that regulate these dorsoventrally asymmetric external patterns are largely unknown. To address this, we have analyzed the spontaneous medaka mutant Double anal fin (Da), which exhibits a mirror-image duplication of the ventral half across the lateral midline from larva to adult. Da is an enhancer mutant for zic1 and zic4 in which their expression in dorsal somites is lost. We show that the dorsoventral polarity in Da somites is lost and then demonstrate using transplantation techniques that somites and their derived tissues globally determine the multiple dorsal-specific characteristics of the body (fin morphology and pigmentation) from embryo to adult. Intriguingly, the zic1/zic4 expression in the wild type persists throughout life in the dorsal parts of somite derivatives, i.e. the myotome, dermis and vertebrae, forming a broad dorsal domain in the trunk. Comparative analysis further implies a central role for zic1/zic4 in morphological diversification of the teleost body. Taken together, we propose that the teleost trunk consists of dorsal/ventral developmental modules and that zic1/zic4 in somites function as selector genes in the dorsal module to regulate multiple dorsal morphologies.

    DOI: 10.1242/dev.088567

    PubMed

  • Trunk exoskeleton in teleosts is mesodermal in origin Reviewed International journal

    Atsuko Shimada, Toru Kawanishi, Takuya Kaneko, Hiroki Yoshihara, Tohru Yano, Keiji Inohaya, Masato Kinoshita, Yasuhiro Kamei, Koji Tamura, Hiroyuki Takeda

    Nature Communications   4   1639 - 1639   2013

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    Language:English   Publishing type:Research paper (scientific journal)  

    The vertebrate mineralized skeleton is known to have first emerged as an exoskeleton that extensively covered the fossil jawless fish. The evolutionary origin of this exoskeleton has long been attributed to the emergence of the neural crest, but experimental evaluation for this is still poor. Here we determine the embryonic origin of scales and fin rays of medaka (teleost trunk exoskeletons) by applying long-term cell labelling methods, and demonstrate that both tissues are mesodermal in origin. Neural crest cells, however, fail to contribute to these tissues. This result suggests that the trunk neural crest has no skeletogenic capability in fish, instead highlighting the dominant role of the mesoderm in the evolution of the trunk skeleton. This further implies that the role of the neural crest in skeletogenesis has been predominant in the cephalic region from the early stage of vertebrate evolution.

    DOI: 10.1038/ncomms2643

    PubMed

  • The medaka zic1/zic4 mutant provides molecular insights into teleost caudal fin evolution Reviewed International journal

    Yuuta Moriyama, Toru Kawanishi, Ryohei Nakamura, Tatsuya Tsukahara, Kenta Sumiyama, Maximiliano L Suster, Koichi Kawakami, Atsushi Toyoda, Asao Fujiyama, Yuuri Yasuoka, Yusuke Nagao, Etsuko Sawatari, Atsushi Shimizu, Yuko Wakamatsu, Masahiko Hibi, Masanori Taira, Masataka Okabe, Kiyoshi Naruse, Hisashi Hashimoto, Atsuko Shimada, Hiroyuki Takeda

    Current Biology   22 ( 7 )   601 - 7   2012.4

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    Language:English   Publishing type:Research paper (scientific journal)  

    Teleosts have an asymmetrical caudal fin skeleton formed by the upward bending of the caudal-most portion of the body axis, the ural region. This homocercal type of caudal fin ensures powerful and complex locomotion and is regarded as one of the most important innovations for teleosts during adaptive radiation in an aquatic environment. However, the mechanisms that create asymmetric caudal fin remain largely unknown. The spontaneous medaka (teleost fish) mutant, Double anal fin (Da), exhibits a unique symmetrical caudal skeleton that resembles the diphycercal type seen in Polypterus and Coelacanth. We performed a detailed analysis of the Da mutant to obtain molecular insight into caudal fin morphogenesis. We first demonstrate that a large transposon, inserted into the enhancer region of the zic1 and zic4 genes (zic1/zic4) in Da, is associated with the mesoderm-specific loss of their transcription. We then show that zic1/zic4 are strongly expressed in the dorsal part of the ural mesenchyme and thereby induce asymmetric caudal fin development in wild-type embryos, whereas their expression is lost in Da. Comparative analysis further indicates that the dorsal mesoderm expression of zic1/zic4 is conserved in teleosts, highlighting the crucial role of zic1/zic4 in caudal fin morphogenesis.

    DOI: 10.1016/j.cub.2012.01.063

    PubMed

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Books

Presentations

  • Formation control between leader and migratory follower tissues facilitates coordinated growth Invited International conference

    Toru Kawanishi, Takamichi Sushida, Tony, Y.-C. Tsai, Hiroyuki Takeda, Sean G. Megason

    Joint Meeting of 77th Annual Meeting of the Japan Society of Cell Biology and 56th Annual Meeting of the Japanese Society of Developmental Biologists  2025.7  Japanese Society of Developmental Biologists (JSDB), Japan Society for Cell Biology (JSCB)

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    Event date: 2025.7

    Language:English   Presentation type:Oral presentation (invited, special)  

    Venue:WINC Aichi, Aichi   Country:Japan  

  • Collective cell migration facilitates coordinated growth of the midline tissues during zebrafish body axis elongation International coauthorship International conference

    Toru Kawanishi, Takamichi Sushida, Tony, Y.-C. Tsai, Hiroyuki Takeda, Sean G. Megason

    85th Fujihara Seminar: The Mechanics of Life Across Scales  2025.5  The Fujihara Foundation of Science

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    Event date: 2025.5

    Language:English   Presentation type:Oral presentation (general)  

    Venue:Awaji Yumebutai, Hyogo   Country:Japan  

  • Collective cell migration of floorplate and hypochord cells facilitates coordinated growth of midline tissues during zebrafish body axis elongation International coauthorship International conference

    Toru Kawanishi, Takamichi Sushida, Tony Tsai, Hiroyuki Takeda, Sean Megason

    Self-Organization in Biology, Freiburg Spemann-Mangold Centennial Symposium  2024.9  Elsevier, International Society of Developmental Biology (ISDB)

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    Event date: 2024.9

    Language:English   Presentation type:Poster presentation  

    Venue:University of Freiburg   Country:Germany  

  • Collective cell migration of floorplate and hypochord cells allows their coordinated growth with the notochord during body axis elongation International coauthorship International conference

    Toru Kawanishi, Takamichi Sushida, Tony, Y.-C. Tsai, Hiroyuki Takeda, Sean G. Megason

    18th International Zebrafish Conference  2024.8  International Zebrafish Society (IZFS)

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    Event date: 2024.8

    Language:English   Presentation type:Oral presentation (general)  

    Venue:Miyako Messe, Kyoto   Country:Japan  

  • Collective cell migration drives tissue elongation during coordinate growth of zebrafish midline tissues International coauthorship International conference

    Toru Kawanishi, Takamichi Sushida, Tony, Y.-C. Tsai, Hiroyuki Takeda, Sean G. Megason

    55th Annual Meeting of the Japanese Society of Developmental Biologists  2022.6  Japanese Society of Developmental Biologists (JSDB)

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    Event date: 2022.5 - 2022.6

    Language:English   Presentation type:Oral presentation (general)  

    Venue:Kanazawa Bunka Hall, Ishikawa   Country:Japan  

  • ゼブラフィッシュ体軸伸長過程における正中軸組織の協調した伸長 International coauthorship

    河西 通, メガソン ショーン, 武田 洋幸

    第44回日本分子生物学会年会  2021.12  日本分子生物学会

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    Event date: 2021.12

    Language:Japanese   Presentation type:Poster presentation  

    Venue:パシフィコ横浜   Country:Japan  

  • Coordinated growth of midline tissues in the zebrafish body axis elongation International coauthorship International conference

    Toru Kawanishi, Hiroyuki Takeda, Sean G. Megason

    53rd Annual Meeting of the Japanese Society of Developmental Biologists (cancelled due to the pandemic)  Japanese Society of Developmental Biologists (JSDB)

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    Event date: 2020.5

    Language:English   Presentation type:Oral presentation (general)  

    Venue:Kumamoto   Country:Japan  

  • Coordinated growth of multiple tissues during zebrafish body axis elongation International coauthorship International conference

    Toru Kawanishi, Hiroyuki Takeda, Sean G. Megason

    6th International Practical Course of The Latin American Zebrafish Network (LAZEN 2020) (cancelled due to the pandemic)  Latin America Zebrafish Network (LAZEN)

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    Event date: 2020.3 - 2020.4

    Language:English   Presentation type:Oral presentation (general)  

    Venue:Universidad Peruana Cayetano Heredia (UPCH), Lima   Country:Peru  

  • ゼブラフィッシュ胚における正中軸組織の協調した伸長現象 Invited International coauthorship

    河西 通, Sean G. Megason, 武田 洋幸

    第9回Tokyo Vertebrate Morphology Meeting  2019.7 

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    Event date: 2019.7

    Language:Japanese   Presentation type:Oral presentation (invited, special)  

    Venue:東京慈恵会医科大学   Country:Japan  

  • Coordinated growth of midline tissues in the zebrafish axis elongation International coauthorship International conference

    Toru Kawanishi, Hiroyuki Takeda, Sean G. Megason

    52nd Annual Meeting of the Japanese Society of Developmental Biologists  2019.5  Japanese Society of Developmental Biologists (JSDB)

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    Event date: 2019.5

    Language:English   Presentation type:Oral presentation (general)  

    Venue:International House Osaka, Osaka   Country:Japan  

  • Coordinated tissue elongation in the zebrafish posterior body Invited International coauthorship International conference

    Toru Kawanishi, Sean G. Megason

    Japan-Tronto Morphogenesis Symposium  2017.7  University of Toronto

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    Event date: 2017.7

    Language:English   Presentation type:Oral presentation (general)  

    Venue:Peter Giligan Centre for Research and Learning   Country:Canada  

  • Expression level of the dorsal determinant gene zic1 associates with size variation in the dorsal fin of medaka International conference

    Toru Kawanishi, Atsuko Shimada, Hiroyuki Takeda

    18th Japanese Medaka and Zebrafish Meeting  2012.9  Japanese Medaka and Zebrafish Meeting (JMZM)

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    Event date: 2012.9

    Language:English   Presentation type:Poster presentation  

    Venue:Kyoto University, Kyoto   Country:Japan  

  • メダカの背鰭サイズの変化と背側領域決定遺伝子zic1の発現量変動との関係

    河西 通, 島田敦子, 武田洋幸

    日本動物学会 第83回大会  2012.9  日本動物学会

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    Event date: 2012.9

    Language:Japanese   Presentation type:Oral presentation (general)  

    Venue:大阪大学   Country:Japan  

  • Somite and cell transplantation methods in medaka Invited International conference

    Toru Kawanishi, Atsuko Shimada, Hiroyuki Takeda

    NUS/TLL/NIBB Joint Practical Workshop on Genetics, Genomics & Imaging in Medaka and Zebrafish  2012.7  National University of Singapore (NUS), Temasek Life Sciences Laboratory (TLL), National Institute of Basic Biology (NIBB)

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    Event date: 2012.7

    Language:English   Presentation type:Public lecture, seminar, tutorial, course, or other speech  

    Venue:National University of Singapore   Country:Singapore  

  • zic1 and zic4 in late embryogenesis mediate patterning for adult dorsoventral trunk structures International conference

    Toru Kawanishi, Yuuta Moriyama, Atsuko Shimada, Hiroyuki Takeda

    44th Annual Meeting of the Japanese Society of Developmental Biologists  2011.5  Japanese Society of Developmental Biologists (JSDB)

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    Event date: 2011.5

    Language:English   Presentation type:Oral presentation (general)  

    Venue:Okinawa Convention Center, Okinawa   Country:Japan  

  • メダカDa 変異体を用いた体幹部背腹パターン形成メカニズムの解析

    河西 通, 島田敦子, 武田洋幸

    日本発生生物学会 夏季シンポジウム  2010.8  日本発生生物学会

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    Event date: 2010.8

    Language:Japanese   Presentation type:Oral presentation (general)  

    Venue:八王子セミナーハウス   Country:Japan  

  • zic1 and zic4 expression in the somite regulates dorsalization of the fish trunk structures International conference

    Toru Kawanishi, Yuuta Moriyama, Ryohei Nakamura, Atsuko Shimada, Hiroyuki Takeda

    Society for Developmental Biology 69th Annual Meeting  2010.8  Society for Developmental Biology (SDB)

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    Event date: 2010.8

    Language:English   Presentation type:Poster presentation  

    Venue:Albuquerque Convention Center, New Mexico   Country:United States  

  • zic1 and zic4 expression in the somite regulates dorsalization of the medaka trunk International conference

    Toru Kawanishi, Ryohei Nakamura, Atsuko Shimada, Hiroyuki Takeda

    43rd Annual Meeting of the Japanese Society of Developmental Biologists  2010.6  Japanese Society of Developmental Biologists (JSDB)

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    Event date: 2010.6

    Language:English   Presentation type:Poster presentation  

    Venue:Kyoto International Conference Center, Kyoto   Country:Japan  

  • メダカDa変異体を用いた体節移植から明らかになった体幹部背腹パターン形成メカニズム Invited

    河西 通, 守山裕大, 島田敦子, 武田洋幸

    日本動物学会第80回大会  2009.9  日本動物学会

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    Event date: 2009.9

    Language:Japanese   Presentation type:Oral presentation (invited, special)  

    Venue:静岡グランシップ   Country:Japan  

  • The loss of zic1/zic4 expression in the somite is responsible for the ventralizing phenotype in the medaka mutant Da International conference

    Toru Kawanishi, Atsuko Shimada, Hiroyuki Takeda

    42nd Annual Meeting of the Japanese Society of Developmental Biologists  2009.5  Japanese Society of Developmental Biologists (JSDB)

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    Event date: 2009.5

    Language:English   Presentation type:Poster presentation  

    Venue:Toki Messe, Niigata   Country:Japan  

  • 体節における背腹方向の領域分割

    河西 通, 島田敦子, 武田洋幸

    定量生物学の会 第1回年会  2009.1  定量生物学の会

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    Event date: 2009.1

    Language:Japanese   Presentation type:Poster presentation  

    Venue:東京大学   Country:Japan  

  • メダカ体幹部背腹パターン形成において体節は主導的な役割を果たす

    河西 通, 島田敦子, 武田洋幸

    第14回小型魚類研究会  2008.9  小型魚類研究会

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    Event date: 2008.9

    Language:Japanese   Presentation type:Poster presentation  

    Venue:岡崎カンファレンスセンター   Country:Japan  

  • A critical role of the somite for D-V patterning in the trunk region of medaka International conference

    Toru Kawanishi, Atsuko Shimada, Hiroyuki Takeda

    41st Annual Meeting of the Japanese Society of Developmental Biologists  2008.5  Japanese Society of Developmental Biologists (JSDB)

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    Event date: 2008.5

    Language:English   Presentation type:Poster presentation  

    Venue:Tokushima Arts Foundation for Culture, Tokushima   Country:Japan  

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Awards

  • 交流助成 交流プログラム【海外派遣】第2回

    2024.10   中谷医工計測技術振興財団  

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    Award type:Award from publisher, newspaper, foundation, etc.  Country:Japan

  • 岡田節人基金若手研究者海外交流(派遣)助成

    2022.10   日本発生生物学会  

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    Award type:Award from Japanese society, conference, symposium, etc.  Country:Japan

  • Best Poster Prize

    2022.10   国際発生生物学会  

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    Award type:Award from international society, conference, symposium, etc.  Country:France

  • 第43回大会 Best Presentation Award

    2010.6   日本発生生物学会  

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    Award type:Award from international society, conference, symposium, etc.  Country:Japan

  • 理学系研究科研究奨励賞(修士)

    2010.3   東京大学  

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    Country:Japan

  • 理学部学修奨励賞

    2008.3   東京大学  

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    Country:Japan

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Research Projects

  • 体幹筋形成における細胞外マトリクスの動的振る舞い

    2023.10 - 2024.9

    成茂動物科学振興基金  2023年度研究助成 

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    Authorship:Principal investigator  Grant type:Competitive

  • Evolution of a novel trait promoted by mechanical stress

    Grant number:23H00385  2023.4 - 2028.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (A)

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    Grant type:Competitive

    Grant amount:\46410000 ( Direct Cost: \35700000 、 Indirect Cost:\10710000 )

  • ゼブラフィッシュ胚体軸伸長過程において組織同士の長さを一致させる発生機構 International coauthorship

    Grant number:21K15101  2021.4 - 2025.3

    日本学術振興会  科学研究費助成事業  若手研究

    河西 通

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    Grant type:Competitive

    Grant amount:\4680000 ( Direct Cost: \3600000 、 Indirect Cost:\1080000 )

    組織の伸長は、胚体内の様々な部位や器官で見られる重要な発生現象である。例えば、体軸伸長によって頭尾軸方向に伸びた体幹が形成され、肢芽の伸長によって長軸方向に発達した四肢が発達する。これらの伸長する器官は単一の組織によるものではなく、一般に表皮、筋肉、骨組織など複数の組織によって構成されている。しかし、伸長する複数の組織がいかに協調して長さを揃えているのかについては、ほとんど解明されていない。申請者はゼブラフィッシュ胚の体軸伸長プロセスにおけるfloor plate(FP)と脊索の協調した伸長現象に着目し、これらの組織が協調して伸長するメカニズムを明らかにする。
    本年度は、中軸組織が互いに後端部において接着しているという観察事実をもとに、この構造が複数組織の協調した伸長現象にどのように寄与するかについて、共同研究者の協力のもと2次元バーテックスモデルを用いてシミュレーション解析を行った。その結果、組織間の伸長速度の違いを本機構が調整しうること(fine-tuning)を見出した。
    また、FPおよび脊索を含む中軸組織がいつどのように分化するのかについて遺伝子発現レベルでの詳細な追跡を行うため、FPと脊索が蛍光標識されたトランスジェニック系統を用いて、原腸形成期および体節形成期においてFPおよび脊索細胞またはその前駆細胞をFACSを用いて分画した。分取した細胞それぞれからRNA遺伝子発現プロファイルを取得することができた。

  • Biomechanics of coordinated elongation of midline tissues in zebrafish embryos

    Grant number:19K23741  2019.8 - 2023.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Research Activity Start-up

    Kawanishi Toru

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    Grant type:Competitive

    Grant amount:\2860000 ( Direct Cost: \2200000 、 Indirect Cost:\660000 )

    We investigated the developmental mechanism on coordinated elongation of floor plate (FP) and notochord during body axis elongation of zebrafish embryos. Live timelapse imaging revealed that FP cells collectively migrate posteriorly during the elongation process. We found that the collective migration triggered cell proliferation within the FP tissue, enabling FP elongation. We propose that coordinated elongation of FP and notochord is achieved by synchronous migration of FP cells together with the elongating notochord.

  • 組織変形ダイナミクスの定量解析に基づくメダカ顔面形態の立体構築過程の解明

    Grant number:14J07752  2014.4 - 2017.3

    日本学術振興会  科学研究費助成事業  特別研究員奨励費

    河西 通

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    Grant type:Competitive

    Grant amount:\4420000 ( Direct Cost: \3400000 、 Indirect Cost:\1020000 )

    脊椎動物の顔面形態は種によって最も多様性に富んだ形質の一つであり、またヒトに限らずさまざまな生物において個体識別やコミュニケーションに使用される重要な形態である。これまでに、眼や咽頭など、顔面を構成する各器官の形成を司る分子は数多く同定されてきた。しかし、顔面にある各器官の配置パターンの形成プロセスは全く不明のままである。
    本研究では、小型魚類顔面形態の形成過程において、どのような発生プログラムに基づいて各器官の配置パターンが決定されるのかを、時系列を追うことにより、組織レベルおよび細胞レベルにおいて何が駆動要因になっているのかという観点から明らかにする。今回はとくに、咽頭を構成する咽頭弓の形成過程に着目する。
    本年度は、ゼブラフィッシュ胚を用いて鰓弓形成過程のイメージングおよび記載を行った。EGFP・kikGR・tdTomatoトランスジェニック系統やkikGR・Lyn-EGFP・tdTomato-NLSなどのmRNAインジェクション法を用いて、鰓弓を構成する神経堤細胞の細胞核や細胞質を可視化することにより観察した。その結果、鰓弓の形成過程では神経堤細胞の移動、集合および凝集、伸長、左右の形成の融合、伸長という段階を経ることがわかった。

  • メダカDa変異体を用いた体幹部背腹パターン形成メカニズムの解明

    Grant number:10J07483  2010 - 2012

    日本学術振興会  科学研究費助成事業  特別研究員奨励費

    河西 通

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    Grant type:Competitive

    Grant amount:\2100000 ( Direct Cost: \2100000 )

    体幹部の背腹を決定するメカニズムについては、これまでに初期胚でBMPなどの分子がつくる非対称な濃度勾配によって背腹軸が形成されることが明らかになってきた。しかし、この発生初期の軸性が発生後期における実際の形態としての背腹パターンとどのように繋がっているのかについては、ほとんど理解されていない。
    本研究では、ユニークな背腹異常の表現型を示すメダカ突然変異体Daを用いて、脊椎動物の発生過程後期における背腹パターン形成メカニズムを明らかにすることを目的としている。
    私はこれまでに、新たに確立した組織移植実験系を用いて、Da変異体の原因遺伝子zic1およびzic4の体節における発現が、体幹部の外部形態の背側化を支配していることを示した。zic1およびzic4は体節形成後まもなく体節において発現する遺伝子である。
    今回、メダカにおける初代培養実験の結果から、体節におけるzic1およびzic4の区画的な発現が周囲の組織によって誘導されていること、そしてその発現は発生後期以降細胞自律的に制御されるようになることがわかった。すなわち、メダカの体幹にみられる背腹方向の区画的な構造は、発生後期においてzic1およびzic4を介して、BMPなどの濃度勾配情報からアナログ-デジタル変換されていると解釈できる。また、さまざまな魚類について遺伝子発現解析を行った結果から、本機構は少なくとも魚類において広く保存されていることがわかった。
    以上の結果の一部は、研究論文としてDevelopment誌に受理された。

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Teaching Experience

  • 生命理工学基礎実験・演習第三

    2024.10 Institution:東京科学大学

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    Level:Undergraduate (specialized)  Country:Japan

  • 生命理工学特別講義4

    2023.4 - 2024.3 Institution:東京工業大学

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    Level:Undergraduate (specialized)  Country:Japan

  • 生命理工学基礎実験・演習第三

    2022.10 - 2024.9 Institution:東京工業大学

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    Level:Undergraduate (specialized)  Country:Japan

Academic Activities

  • UTokyoGSC-Next 三期生第二段階受講生 受入・指導 International contribution

    東京大学  ( 東京大学 ) 2022.4 - 2023.3

  • The NUS/TLL/NIBB joint practical workshop on "Genetics, Genomics and Imaging in Medaka & Zebrafish", lecturer International contribution

    Christoph Winkler, Karuna Sampath, Kiyoshi Naruse, Naoto Ueno, Minoru Tanaka, Yasuhiro Kamei  ( Department of Biological Sciences and Centre for Bioimaging Sciences, NUS, Singapore ) 2012.7

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    Type:Academic society, research group, etc. 

    メダカ胚を用いた実験技術(組織移植、イメージング等)の指導