Updated on 2026/04/15

写真a

 
NAKAMURA TAKASHI
 
Organization
School of Environment and Society Associate Professor
Title
Associate Professor
External link

Research Areas

  • Natural Science / Human geosciences

Papers

  • Phytoplankton size structure and biogeochemical responses to nutrient enrichment in an oligotrophic coral reef

    Jorge L. Suarez-Caballero, Takashi Nakamura

    2026.4

  • The grazing impact of megaherbivores on sediment accumulation and stabilization functions of seagrass meadows in a subtropical coral reef lagoon

    Toshihiro Miyajima, Takashi Nakamura, Atsushi Watanabe, Naoko Morimoto, Kazuo Nadaoka

    Limnology and Oceanography   2025.7

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    Publishing type:Research paper (scientific journal)  

    DOI: 10.1002/lno.70088

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  • Disentangling mechanisms behind emerged sea surface temperature anomalies in Indonesian seas during El Niño years: insights from closed heat budget analysis

    Faisal Amri, Ahmed Eladawy, Joko Prihantono, Takashi Nakamura

    Journal of Oceanography   2024.10

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1007/s10872-024-00728-6

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  • Sea surface temperature budget in Indonesian seas: the role of vertical turbulent flux and its east–west variations

    F Amri, A Eladawy, T Nakamura

    IOP Conference Series: Earth and Environmental Science   2024.6

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    Publishing type:Research paper (scientific journal)  

    <jats:title>Abstract</jats:title>
    <jats:p>The vertical turbulent flux, which comprises heat flux and vertical mixing, is one of key processes governing seawater temperature changes in the vertical direction. In this study, the influence of vertical turbulent flux on sea surface temperature (represented by a layer between the free-surface and approximately 20 m depth) in Indonesian seas was diagnosed from an eddy-permitting ocean modeling experiment result. The heat flux, as the sum of the net heat flux at the surface and penetrative shortwave radiation at the base of the surface layer, induced a net cooling tendency in both eastern and western Indonesia (represented by the Java Sea and Banda Sea, respectively). The cooling tendency due to the heat flux was opposed by the warming tendency induced by vertical mixing at the base of the surface layer, preventing excessive heat loss in the surface layer. An exception occurred during the Boreal Autumn in the Banda Sea, when the heat flux and vertical mixing resulted in warming and cooling tendencies, respectively. It was further found that the effect of vertical mixing on the surface layer heat budget was sensitive to the selection of the base layer depth, highlighting the mixing-related dynamic variation within the water column. In summary, this study provides additional insights into the near-surface dynamics that govern sea surface temperature seasonality in Indonesian Seas.</jats:p>

    DOI: 10.1088/1755-1315/1350/1/012005

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  • Towards a combined human-natural system approach in the Northern Red Sea Region: Ecological challenges, sustainable development, and community engagement

    Ahmed Eladawy, Neil C. Mitchell, Takashi Nakamura, Momen El-Husseiny, Yuta A. Takagi, Nabil Elhady, Brook Muller, Sara Abdel-Hamid, Asmaa Mohammed, Kazuo Nadaoka, J.P. Walsh

    Marine Policy   2024.1

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1016/j.marpol.2023.105917

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  • MARINE ENVIRONMENT ANALYSIS DURING TYPHOON TOWARDS MODELING THE CORAL REEF ECOSYSTEM

    Yuki KAMIDAIRA, Nobuyuki IWAMAE, Katsunori YAMAKI, Takashi NAKAMURA, Yusuke UCHIYAMA

    Japanese Journal of JSCE   2024

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    DOI: 10.2208/jscejj.24-17211

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  • Current status and potential of coral reef conservation through human interventions: focusing on coral bleaching

    Tomihiko HIGUCHI, Toshihiro MIYAJIMA, Toshiyuki TAKAGI, Ikuko YUYAMA, Sylvain AGOSTINI, Takashi NAKAMURA, Hiroyuki FUJIMURA

    Journal of the Japanese Coral Reef Society   2024

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.3755/jcrs.26.19

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  • CHARACTERRISTICS OF TEMPORAL VARIATIONS OF SURFACE WATER TEMPERETURE AND SEA SURFACE HEAT FLUX IN TOKYO BAY

    Koyo HIRAGA, Hiroshi YAGI, Ryoko ODA, Takashi NAKAMURA, Yushi MORIOKA, Yasumasa MIYAZAWA, Kazuo NADAOKA

    Japanese Journal of JSCE   2024

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.2208/jscejj.24-17227

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  • Representing the impact of Rhizophora mangroves on flow in a hydrodynamic model (COAWST_rh v1.0): The importance of three-dimensional root system structures

    Masaya Yoshikai, Takashi Nakamura, Eugene C. Herrera, Rempei Suwa, Rene Rollon, Raghab Ray, Keita Furukawa, Kazuo Nadaoka

    Geoscientific Model Development   16 ( 20 )   5847 - 5863   2023.10

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    Publishing type:Research paper (scientific journal)  

    DOI: 10.5194/gmd-16-5847-2023

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  • Assessment of Life Form and Adaptive Capacity of Coral Reef Ecosystem in Tanjung Tiram Waters, Southeast Sulawesi

    Kangkuso Analuddin, Muhammad Helmi, Luky Adrianto, Wa Iba, L. M.Golok Jaya, Andi Septiana, Rempei Suwa, Kazuo Nadaoka, Takashi Nakamura, Lalang

    Pakistan Journal of Biological Sciences   26 ( 10 )   534 - 542   2023

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    Publishing type:Research paper (scientific journal)  

    DOI: 10.3923/pjbs.2023.534.542

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  • Field Measurement and Prediction of Drag in a Planted Rhizophora Mangrove Forest

    Masaya Yoshikai, Takashi Nakamura, Dominic M. Bautista, Eugene C. Herrera, Alvin Baloloy, Rempei Suwa, Ryan Basina, Yasmin H. Primavera‐Tirol, Ariel C. Blanco, Kazuo Nadaoka

    Journal of Geophysical Research: Oceans   2022.11

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    Publishing type:Research paper (scientific journal)  

    DOI: 10.1029/2021JC018320

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  • Rainfall Variability and Tidal Inundation Influences on Mangrove Greenness in Karimunjawa National Park, Indonesia

    Joko Prihantono, Takashi Nakamura, Kazuo Nadaoka, Anindya Wirasatriya, Novi Susetyo Adi

    Sustainability   2022.7

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    Publishing type:Research paper (scientific journal)  

    DOI: 10.3390/su14148948

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  • Seasonal and Interannual Variability of the Tropical Maritime Continent Upper-Ocean Carbon Cycle Over the Last Decade: Results from a Newly Developed Regional Scale Model

    Faisal Amri, Takashi Nakamura, Atsushi Watanabe, Aditya R. Kartadikaria, Kazuo Nadaoka

    2022.6

  • Consideration of Genetic Structure in the Ecologically or Biologically Significant Marine Areas Criteria: A Review of Convention on Biological Diversity Regional Workshops and A Case Study of Coral Reef Conservation Planning

    Takehisa Yamakita, Fumiaki Sodeyama, Akira Iguchi, Yuko F. Kitano, Kosuke M. Teshima, Akifumi Shimura, Aki Nakabayashi, Satoshi Nagai, Takashi Nakamura, Hiroaki Aizawa, Nina Yasuda

    FRONTIERS IN MARINE SCIENCE   9   2022.5

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  • Automatic Semantic Segmentation of Benthic Habitats Using Images from Towed Underwater Camera in a Complex Shallow Water Environment

    Hassan Mohamed, Kazuo Nadaoka, Takashi Nakamura

    Remote Sensing   14 ( 8 )   1818 - 1818   2022.4

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    Publishing type:Research paper (scientific journal)   Publisher:{MDPI} {AG}  

    DOI: 10.3390/rs14081818

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  • Predicting mangrove forest dynamics across a soil salinity gradient using an individual-based vegetation model linked with plant hydraulics

    Masaya Yoshikai, Takashi Nakamura, Rempei Suwa, Sahadev Sharma, Rene Rollon, Jun Yasuoka, Ryohei Egawa, Kazuo Nadaoka

    Biogeosciences   19 ( 6 )   1813 - 1832   2022.3

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:Copernicus {GmbH}  

    <jats:p>Abstract. In mangrove forests, soil salinity is one of the most significant environmental factors determining forest distribution and productivity as it
    limits plant water uptake and carbon gain. However, salinity control on mangrove productivity through plant hydraulics has not been investigated by
    existing mangrove models. Here we present a new individual-based model linked with plant hydraulics to incorporate physiological characterization of
    mangrove growth under salt stress. Plant hydraulics was associated with mangroves' nutrient uptake and biomass allocation apart from water flux and
    carbon gain. The developed model was performed for two coexisting species – Rhizophora stylosa and Bruguiera gymnorrhiza – in a
    subtropical mangrove forest in Japan. The model predicted that the productivity of both species was affected by soil salinity through downregulation
    of stomatal conductance. Under low-soil-salinity conditions (&lt; 28 ‰), B. gymnorrhiza trees grew faster and suppressed the
    growth of R. stylosa trees by shading that resulted in a B. gymnorrhiza-dominated forest. As soil salinity increased, the
    productivity of B. gymnorrhiza was significantly reduced compared to R. stylosa, which led to an increase in biomass of
    R. stylosa despite the enhanced salt stress (&gt; 30 ‰). These predicted patterns in forest structures across the soil salinity
    gradient remarkably agreed with field data, highlighting the control of salinity on productivity and tree competition as factors that shape the
    mangrove forest structures. The model reproducibility of forest structures was also supported by the predicted self-thinning processes, which
    likewise agreed with field data. Aside from soil salinity, seasonal dynamics in atmospheric variables (solar radiation and temperature) were
    highlighted as factors that influence mangrove productivity in a subtropical region. This physiological principle-based improved model has the
    potential to be extended to other mangrove forests in various environmental settings, thus contributing to a better understanding of mangrove
    dynamics under future global climate change.
    </jats:p>

    DOI: 10.5194/bg-19-1813-2022

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  • Integrated Population Genomic Analysis and Numerical Simulation to Estimate Larval Dispersal of Acanthaster cf. solaris Between Ogasawara and Other Japanese Regions

    Mizuki Horoiwa, Takashi Nakamura, Hideaki Yuasa, Rei Kajitani, Yosuke Ameda, Tetsuro Sasaki, Hiroki Taninaka, Taisei Kikuchi, Takehisa Yamakita, Atsushi Toyoda, Takehiko Itoh, Nina Yasuda

    Frontiers in Marine Science   8   2022.1

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    Publishing type:Research paper (scientific journal)   Publisher:Frontiers Media SA  

    The estimation of larval dispersal on an ecological timescale is significant for conservation of marine species. In 2018, a semi-population outbreak of crown-of-thorns sea star, <italic>Acanthaster</italic> cf. <italic>solaris</italic>, was observed on a relatively isolated oceanic island, Ogasawara. The aim of this study was to assess whether this population outbreak was caused by large-scale larval recruitment (termed secondary outbreak) from the Kuroshio region. We estimated larval dispersal of the coral predator <italic>A.</italic> cf. <italic>solaris</italic> between the Kuroshio and Ogasawara regions using both population genomic analysis and simulation of oceanographic dispersal. Population genomic analysis revealed overall genetically homogenized patterns among Ogasawara and other Japanese populations, suggesting that the origin of the populations in the two regions is the same. In contrast, a simulation of 26-year oceanographic dispersal indicated that larvae are mostly self-seeded in Ogasawara populations and have difficulty reaching Ogasawara from the Kuroshio region within one generation. However, a connectivity matrix produced by the larval dispersal simulation assuming a Markov chain indicated gradual larval dispersal migration from the Kuroshio region to Ogasawara in a stepping-stone manner over multiple years. These results suggest that the 2018 outbreak was likely the result of self-seeding, including possible inbreeding (as evidenced by clonemate analysis), as large-scale larval dispersal from the Kurishio population to the Ogasawara population within one generation is unlikely. Instead, the population in Ogasawara is basically sustained by self-seedings, and the outbreak in 2018 was also most likely caused by successful self-seedings including possible inbreeding, as evidenced by clonemate analysis. This study also highlighted the importance of using both genomic and oceanographic methods to estimate larval dispersal, which provides significant insight into larval dispersal that occurs on ecological and evolutionary timescales.

    DOI: 10.3389/fmars.2021.688139

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  • Mangrove Above-Ground Biomass and Carbon Stock in the Karimunjawa-Kemujan Islands Estimated from Unmanned Aerial Vehicle-Imagery

    Anindya Wirasatriya, Rudhi Pribadi, sigit bayhu, Lilik Maslukah, Denny Nugroho Sugianto, Muhammad Helmi, Raditya Rizki Ananta, Novi Susetyo Adi, Terry Louise Kepel, Restu N. A. Ati, Mariska A. Kusumaningtyas, Rempei Suwa, Raghab Ray, Takashi Nakamura, Kazuo Nadaoka

    Sustainability   2022.1

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    Publishing type:Research paper (scientific journal)  

    DOI: 10.3390/su14020706

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  • Dissolved and particulate carbon export from a tropical mangrove‐dominated riverine system

    Raghab Ray, Toshihiro Miyajima, Atsushi Watanabe, Masaya Yoshikai, Charissa M. Ferrera, Iris Orizar, Takashi Nakamura, Maria Lourdes San Diego‐McGlone, Eugene C. Herrera, Kazuo Nadaoka

    Limnology and Oceanography   2021.9

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    Publishing type:Research paper (scientific journal)   Publisher:Wiley  

    DOI: 10.1002/lno.11934

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    Other Link: https://onlinelibrary.wiley.com/doi/full-xml/10.1002/lno.11934

  • TIME SERIES ANALYSIS FOR MONITORING SEAGRASS HABITAT AND ENVIRONMENT IN BUSUANGA, PHILIPPINES USING GOOGLE EARTH ENGINE

    A. Tamondong, T. Nakamura, T. E. A. Quiros, K. Nadaoka

    The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences   {XLIII}-B3-2021   109 - 116   2021.6

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:Copernicus {GmbH}  

    <jats:p>Abstract. Seagrasses are marine flowering plants which are part of a highly productive coastal ecosystem and play key roles in the coastal processes. Unfortunately, they are declining in area coverage globally, and seagrass losses can be attributed to climate change such as sea-level rise, increase in sea surface temperature, and decrease in salinity, as well as human-related activities. The objective of this research is to assess the historical changes in the seagrass habitat and environment of Busuanga, Philippines using time series data available in the Google Earth Engine (GEE) platform. These include satellite data such as MODIS, Landsat 5, 7, and 8, and SeaWIFS. Reanalysis data such as HYCOM was also utilized in this research. Results from HYCOM data show that there has been a 0.0098 °C increase in the sea surface temperature per decade in Busuanga while MODIS data indicates an increase of 0.0045 °C per decade. Moreover, HYCOM data also shows an overall average of 0.76 mm in sea surface elevation anomaly and a decreasing trend in salinity values at 0.0026 psu per decade. Chlorophyll-a concentration has a minimal increase based on results from MODIS and SeaWIFS. Aside from changes in water parameters, changes in the land also affect seagrasses. Forest loss may cause increased siltation in the coastal ecosystem which can lead to seagrass loss. Based on the results of Landsat satellite image processing, there has been forest cover loss in Busuanga with the highest loss occurring in 2013 when super typhoon Yolanda ravaged the island. Lastly, results from the linear spectral unmixing of 778 Landsat images from 1987–2000 show that the average percent cover of seagrasses in Busuanga were declining through the years.
    </jats:p>

    DOI: 10.5194/isprs-archives-xliii-b3-2021-109-2021

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  • Modeling seagrass bed dynamics under environmental impacts of intensive mariculture activities in Bolinao and Anda, the Philippines

    Masaya Yoshikai, Takashi Nakamura, Yoshiyuki Tanaka, Masahiro Nakaoka, Atsushi Watanabe, Eugene C. Herrera, Takumi Tsuchiya, Toshihiro Miyajima, Maria Lourdes San Diego-McGlone, Miguel D. Fortes, Ariel C. Blanco, Ayin M. Tamondong, Kazuo Nadaoka

    Estuarine, Coastal and Shelf Science   250   2021.3

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    DOI: 10.1016/j.ecss.2020.107152

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  • Scaling relations and substrate conditions controlling the complexity of Rhizophora prop root system

    Masaya Yoshikai, Takashi Nakamura, Rempei Suwa, Reginald Argamosa, Takuya Okamoto, Rene Rollon, Ryan Basina, Yasmin H. Primavera-Tirol, Ariel C. Blanco, Novi Susetyo Adi, Kazuo Nadaoka

    Estuarine, Coastal and Shelf Science   248   2021.1

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    Publishing type:Research paper (scientific journal)  

    DOI: 10.1016/j.ecss.2020.107014

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  • Measurement and Modeling of Above-Ground Root Systems as Attributes of Flow and Wave Attenuation Function of Mangroves

    Masaya Yoshikai, Takashi Nakamura, Rempei Suwa, Rene Rollon, Kazuo Nadaoka

    Mangroves: Ecology, Biodiversity and Management   279 - 303   2021.1

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    Publishing type:Part of collection (book)  

    DOI: 10.1007/978-981-16-2494-0_12

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  • Towards Benthic Habitat 3D Mapping Using Machine Learning Algorithms and Structures from Motion Photogrammetry

    Hassan Mohamed, Kazuo Nadaoka, Takashi Nakamura

    Remote Sensing   2020.1

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    Publishing type:Research paper (scientific journal)  

    DOI: 10.3390/rs12010127

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  • Limited fine-scale larval dispersal of the threatened brooding corals Heliopora spp. as evidenced by population genetics and numerical simulation

    Hiroki Taninaka, Lawrence Patrick C. Bernardo, Yuta Saito, Satoshi Nagai, Mitsuhiro Ueno, Yuko F. Kitano, Takashi Nakamura, Nina Yasuda

    CONSERVATION GENETICS   20 ( 6 )   1449 - 1463   2019.12

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    DOI: 10.1007/s10592-019-01228-7

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  • Transitions in coral communities over 17 years in the Sekisei Lagoon and adjacent reef areas in Okinawa, Japan Reviewed

    Soyoka Muko, Go Suzuki, Mamoru Saito, Takashi Nakamura, Kazuo Nadaoka

    ECOLOGICAL RESEARCH   34 ( 4 )   524 - 534   2019.7

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    DOI: 10.1111/1440-1703.12013

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  • Assessment of water quality and evaluation of best management practices in a small agricultural watershed adjacent to Coral Reef area in Japan

    Ratino Sith, Atsushi Watanabe, Takashi Nakamura, Takahiro Yamamoto, Kazuo Nadaoka

    AGRICULTURAL WATER MANAGEMENT   213   659 - 673   2019.3

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    DOI: 10.1016/j.agwat.2018.11.014

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  • The potential role of temperate Japanese regions as refugia for the coral Acropora hyacinthus in the face of climate change. International journal

    Aki Nakabayashi, Takehisa Yamakita, Takashi Nakamura, Hiroaki Aizawa, Yuko F Kitano, Akira Iguchi, Hiroya Yamano, Satoshi Nagai, Sylvain Agostini, Kosuke M Teshima, Nina Yasuda

    Scientific reports   9 ( 1 )   1892 - 1892   2019.2

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    As corals in tropical regions are threatened by increasing water temperatures, poleward range expansion of reef-building corals has been observed, and temperate regions are expected to serve as refugia in the face of climate change. To elucidate the important indicators of the sustainability of coral populations, we examined the genetic diversity and connectivity of the common reef-building coral Acropora hyacinthus along the Kuroshio Current, including recently expanded (<50 years) populations. Among the three cryptic lineages found, only one was distributed in temperate regions, which could indicate the presence of Kuroshio-associated larval dispersal barriers between temperate and subtropical regions, as shown by oceanographic simulations as well as differences in environmental factors. The level of genetic diversity gradually decreased towards the edge of the species distribution. This study provides an example of the reduced genetic diversity in recently expanded marginal populations, thus indicating the possible vulnerability of these populations to environmental changes. This finding underpins the importance of assessing the genetic diversity of newly colonized populations associated with climate change for conservation purposes. In addition, this study highlights the importance of pre-existing temperate regions as coral refugia, which has been rather underappreciated in local coastal management.

    DOI: 10.1038/s41598-018-38333-5

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  • Carbon Dynamics in Coral Reefs

    Takashi Nakamura

    Blue Carbon in Shallow Coastal Ecosystems   2019

  • Reef-scale modeling of coral calcification responses to ocean acidification and sea-level rise Reviewed

    Takashi Nakamura, Kazuo Nadaoka, Atsushi Watanabe, Takahiro Yamamoto, Toshihiro Miyajima, Ariel C. Blanco

    Coral Reefs   37 ( 1 )   37 - 53   2018.3

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:Springer Verlag  

    DOI: 10.1007/s00338-017-1632-3

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  • Island-enhanced cooling mechanism in typhoon events revealed by field observations and numerical simulations for a coral reef area, Sekisei Lagoon, Japan Reviewed

    Lawrence Patrick C. Bernardo, Kazuo Nadaoka, Takashi Nakamura, Atsushi Watanabe

    OCEAN DYNAMICS   67 ( 11 )   1369 - 1384   2017.11

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1007/s10236-017-1096-6

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  • Analysis of Red Soil Sediment Yield in a Small Agricultural Watershed in Ishigaki Island, Japan, Using Long–Term and High Resolution Monitoring Data Reviewed

    Ratino Sith, Takahiro Yamamoto, Atsushi Watanabe, Takashi Nakamura, Kazuo Nadaoka

    Environmental Processes   4 ( 2 )   333 - 354   2017.6

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1007/s40710-017-0217-z

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  • Evidence of chronic anthropogenic nutrient within coastal lagoon reefs adjacent to urban and tourism centers, Kenya: A stable isotope approach Reviewed

    Jelvas Mwaura, Yu Umezawa, Takashi Nakamura, Joseph Kamau

    MARINE POLLUTION BULLETIN   119 ( 2 )   74 - 86   2017.6

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    DOI: 10.1016/j.marpolbul.2017.04.028

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  • Detection of a high-density brachiolaria-stage larval population of crown-of-thorns sea star (Acanthaster planci) in Sekisei Lagoon (Okinawa, Japan) Reviewed

    Go Suzuki, Nina Yasuda, Kohta Ikehara, Kouki Fukuoka, Takahiko Kameda, Sayaka Kai, Satoshi Nagai, Atushi Watanabe, Takashi Nakamura, Shunsuke Kitazawa, Lawrence Patrick C. Bernardo, Tatsuya Natori, Momoka Kojima, Kazuo Nadaoka

    Diversity   8 ( 2 )   9   2016.6

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:MDPI AG  

    DOI: 10.3390/d8020009

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  • Atmospheric Deposition of Reactive Nitrogen as a Regional-Scale Eutrophication Stress on the Coral Reef Ecosystem Reviewed

    Toshihiro Miyajima, Naoko Morimoto, Takashi Nakamura, Takahiro Yamamoto, Atsushi Watanabe, Kazuo Nadaoka

    Coral Reef Science   95   2016

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    Publisher:Springer Japan  

    DOI: 10.1007/978-4-431-54364-0_8

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  • Mapping VHR Water Depth, Seabed and Land Cover Using Google Earth Data Reviewed

    Antoine Collin, Kazuo Nadaoka, Takashi Nakamura

    ISPRS INTERNATIONAL JOURNAL OF GEO-INFORMATION   3 ( 4 )   1157 - 1179   2014.12

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    DOI: 10.3390/ijgi3041157

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  • A coral polyp model of photosynthesis, respiration and calcification incorporating a transcellular ion transport mechanism Reviewed

    T. Nakamura, K. Nadaoka, A. Watanabe

    CORAL REEFS   32 ( 3 )   779 - 794   2013.9

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    DOI: 10.1007/s00338-013-1032-2

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  • Visualization of sub-daily skeletal growth patterns in massive Porites corals grown in Sr-enriched seawater Reviewed

    Kotaro Shirai, Kohki Sowa, Tsuyoshi Watanabe, Yuji Sano, Takashi Nakamura, Peta Clode

    JOURNAL OF STRUCTURAL BIOLOGY   180 ( 1 )   47 - 56   2012.10

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    DOI: 10.1016/j.jsb.2012.05.017

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  • Coral skeletal d13C simulated from coral internal system model

    Nakamura Takashi, Nadaoka Kazuo, Watanabe Astushi, Miyajima Toshihiro

    Abstracts of Annual Meeting of the Geochemical Society of Japan   59 ( 0 )   69 - 69   2012

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    Language:Japanese   Publisher:GEOCHEMICAL SOCIETY OF JAPAN  

    DOI: 10.14862/geochemproc.59.0.69.0

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  • Estimation of photosynthesis and calcification rates at a fringing reef by accounting for diurnal variations and the zonation of coral reef communities on reef flat and slope: A case study for the Shiraho reef, Ishigaki Island, southwest Japan Reviewed

    T. Nakamura, T. Nakamori

    Coral Reefs   28 ( 1 )   229 - 250   2009.3

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    DOI: 10.1007/s00338-008-0454-8

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  • Seawater carbonate chemistry, community calcification and photosynthesis during experiments with coral reefs at Shiraho reef, Ishigaki Island, southwest Japan, 2009, supplement to: Nakamura, T; Nakamori, T (2009): Estimation of photosynthesis and calcific Reviewed

    PANGAEA - Data Publisher for Earth & Environmental Science   2009

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    Seven coral reef communities were defined on Shiraho fringing reef, Ishigaki Island, Japan. Net photosynthesis and calcification rates were measured by in situ incubations at 10 sites that included six of the defined communities, and which occupied most of the area on the reef flat and slope. Net photosynthesis on the reef flat was positive overall, but the reef flat acts as a source for atmospheric CO2, because the measured calcification/photosynthesis ratio of 2.5 is greater than the critical ratio of 1.67. Net photosynthesis on the reef slope was negative. Almost all excess organic production from the reef flat is expected to be effused to the outer reef and consumed by the communities there. Therefore, the total net organic production of the whole reef system is probably almost zero and the whole reef system also acts as a source for atmospheric CO2. Net calcification rates of the reef slope corals were much lower than those of the branching corals. The accumulation rate of the former was approximately 0.5 m kyr?1 and of the latter was ~0.7-5 m kyr?1. Consequently, reef slope corals could not grow fast enough to keep up with or catch up to rising sea levels during the Holocene. On the other hand, the branching corals grow fast enough to keep up with this rising sea level. Therefore, a transition between early Holocene and present-day reef communities is expected. Branching coral communities would have dominated while reef growth kept pace with sea level rise, and the reef was constructed with a branching coral framework. Then, the outside of this framework was covered and built up by reef slope corals and present-day reefs were constructed.

    DOI: 10.1594/PANGAEA.721856

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  • A geochemical model for coral reef formation Reviewed

    T. Nakamura, T. Nakamori

    Coral Reefs   26 ( 4 )   741 - 755   2007.12

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1007/s00338-007-0262-6

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  • Population dynamics of hermatypic coral communities on reef slope vs. reef flat at Shiraho, Ishigaki Island, southwest Japan Reviewed

    Takashi Nakamura, Toru Nakamori

    Proceedings of 10th International Coral Reef Symposium   1 ( 1 )   460 - 477   2006

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    Language:English   Publishing type:Research paper (international conference proceedings)  

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MISC

  • サンゴ礁生態系における懸濁粒子・沈降粒子の炭素・窒素安定同位体比時空間分布

    宮島利宏, 森本直子, 田中泰章, 田中泰章, 渡邉敦, 中村隆志, 山本高大, 山本高大, 灘岡和夫

    日本地球惑星科学連合大会予稿集(Web)   2016   2016

  • 造礁サンゴによるリンの取込が溶存態リン酸の酸素安定同位体比に与える効果

    FERRERA Charissa M., 渡邉敦, 灘岡和夫, 梅澤有, 森本直子, 中村隆志, 宮島利宏

    日本地球惑星科学連合大会予稿集(Web)   2015   2015

  • A simulation model for coralreef formation: Reef topographies and growth patterns responding to relative sea-level histories

    Nakamura, T, Nakamori, T

    Wright L. L. Sea Level Rise   251 - 261   2011

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  • Organic reef abundance and its geochemical and oceanographic controls since Cretaceous.

    Nakamori, T, Nakamura, T

    Proc. 10th Int. Coral Reef Sym.   486 - 491   2006

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Research Projects

  • 完全固体・試薬不要の小型海洋pH・全アルカリ度連続測定装置の開発

    Grant number:25K22042  2025.6 - 2028.3

    日本学術振興会  科学研究費助成事業  挑戦的研究(萌芽)

    中村 隆志

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    Grant amount:\6370000 ( Direct Cost: \4900000 、 Indirect Cost:\1470000 )

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  • Paleoenvironmental reconstruction based on a coral internal-response model incorporating oxygen, carbon and carbonate clumped isotope dynamics

    Grant number:25K01066  2025.4 - 2029.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

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    Grant amount:\18720000 ( Direct Cost: \14400000 、 Indirect Cost:\4320000 )

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  • Investigation on chemical mechanisms responsible for long-term carbon sequestration in sediment of shallow coastal vegetated habitats

    Grant number:23K24972  2022.4 - 2026.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

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    Grant amount:\17160000 ( Direct Cost: \13200000 、 Indirect Cost:\3960000 )

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  • Model & scenario analyses of the response of coastal ecosystems to industrial structural changes in the Republic of Palau

    Grant number:21KK0112  2021.10 - 2025.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Fund for the Promotion of Joint International Research (Fostering Joint International Research (B))  Fund for the Promotion of Joint International Research (Fostering Joint International Research (B))

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    Grant amount:\18980000 ( Direct Cost: \14600000 、 Indirect Cost:\4380000 )

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  • Can sedimentary bacterial communities be a next-generation coastal environmental indicator?

    Grant number:21H01445  2021.4 - 2024.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (B)  Grant-in-Aid for Scientific Research (B)

    YAGI HIROSHI

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    Grant amount:\17420000 ( Direct Cost: \13400000 、 Indirect Cost:\4020000 )

    We applied the proposed DNA analysis of benthic bacterial communities to 330 sediment samples collected from 77 sites along the coast of Japan (Hokkaido, Kashima-Nada/Kujukuri, Ariake Sea) to clarify the "regional characteristics," "spatial structure," and "temporal variability" of the benthic bacterial communities. We confirmed that the bacterial community in the bottom sediment has the diversity to express the differences hierarchically from the whole image to the detailed structure by changing the range of analysis “zooming”, and that it has the performance required for a broadband biosensor.

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  • Integrated Modelling and Mapping for Assessing Coastal Ecosystem Vulnerability to Multiple Stressors

    Grant number:20F20396  2020.11 - 2023.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for JSPS Fellows  Grant-in-Aid for JSPS Fellows

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    Grant amount:\2200000 ( Direct Cost: \2200000 )

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  • Elucidation and modeling flow rate dependence on photosynthetic and calcification rates of hermatypic corals

    Grant number:20K12134  2020.4 - 2023.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (C)  Grant-in-Aid for Scientific Research (C)

    Nakamura Takashi

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    Grant amount:\4290000 ( Direct Cost: \3300000 、 Indirect Cost:\990000 )

    It is considered that coral metabolic rates are greatly affected by flow conditions. However quantitative assessment of this factor is completely lacking. In this study, the net photosynthetic and respiration rates of corals and the thickness of the diffuse boundary layer (DBL) were investigated using micro-dissolved oxygen electrodes under controlled flow velocity in a recirculating aquarium. In this result, it is confirmed that DBL thickness was proportional to the -0.8 power of the mean flow velocity. This is consistent with the theoretical and semi-empirical relationships of previous works. This leads to the conclusion that the rate of mass exchange at the coral surface is proportional to the 0.8th power of the mean flow velocity. However, photosynthetic and respiration rates did not correlate well with flow velocity, suggesting that they may be limited mainly not by material transfer at the coral surface but by other metabolic factors of corals.

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  • Verification and quantification of export of organic carbon from coastal vegetated ecosystems to outer ocean and subsequent long-term sequestration

    Grant number:18H03354  2018.4 - 2022.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (B)  Grant-in-Aid for Scientific Research (B)

    Miyajima Toshihiro

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    Grant amount:\16900000 ( Direct Cost: \13000000 、 Indirect Cost:\3900000 )

    Toward comprehensive evaluation of the long-term organic carbon (OC) sequestration by coastal vegetated habitats such as seagrass beds and mangroves, we developed a molecular-based technique to quantitatively evaluate the amount of OC exported from the habitats to the open ocean and sequestered in offshore sediment. We developed a real-time PCR technique for detecting DNAs from specific plant species to establish a method for rigorous quantification, and also attempted to convert DNA concentrations in sediments to OC concentrations derived from the same plant species. This method was then applied to several real offshore sediment samples, and used in conjunction with a model to estimate the sedimentation rate in the same zone, to finally enable estimation of the rate of sequestration of specific plant-derived OC into the sediment. The efficiency of the method was demonstrated through the case study conducted for offshore sediments around Okinawa Trough.

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  • Evaluation of the biodiversity conservation mechanism in reef ecosystems under high CO2 and temperature environment : Palau inner reef as a case study

    Grant number:16H05772  2016.4 - 2020.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (B)  Grant-in-Aid for Scientific Research (B)

    Kurihara Haruko

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    Grant amount:\17420000 ( Direct Cost: \13400000 、 Indirect Cost:\4020000 )

    Coral reefs are suspected to be particularly affected by the global warming and ocean acidification caused by the increase of atmospheric CO2 concentration. However, the seawater within Nikko bay at Palau was found to be warm and acidic, but hold high coral cover and high coral diversity. The high seawater pCO2 was found to be caused by the high seawater residence time of more than 2 months and affected by the calcification and decomposition by the organisms living within the bay. From transplantation and tank experiments, it was also found that the coral living within the bay are potentially acclimated to those environments fond within the bay, suggesting that corals may have the ability to adapt to high seawater pCO2 and temperature conditions.

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  • Innovating Ecosystem Dynamics Modeling System for Coral Reefs with Contribution for Enhancing Ecosystem Resilience

    Grant number:15H02268  2015.4 - 2019.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (A)  Grant-in-Aid for Scientific Research (A)

    Nadaoka Kazuo

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    Grant amount:\43810000 ( Direct Cost: \33700000 、 Indirect Cost:\10110000 )

    We developed the following methods and models; 1) accurate remote sensing methods for bathymetry and benthic covers in coral reefs, 2) a reef-scale bottom-up model based on the coral polyp model (Nakamura et al., 2013), 3) a model system incorporating a top-down effect by Acanthaster planci, 4) coral bleaching model which may be used for predicting the reef-scale resposes to higher thermal stresses due to global warming, 5) Runoff models for assessing terrestrial loads on coral reef ecosystems. We tried to apply innovative experimental and laboratory analysis methods for quntitatively demonstrating some important steps in the food web from basal resources to top level predators. By conducting field experiments using plates and others, we found two groups in the species having algal removal effects; one is the group grazing macroalgae and another is the group grazing microalgae on the plates.

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  • Coral polyp-scale modeling for elucidating vital effect of coral skeletal record

    Grant number:26610167  2014.4 - 2017.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Challenging Exploratory Research  Grant-in-Aid for Challenging Exploratory Research

    Nakamura Takashi

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    Grant amount:\3770000 ( Direct Cost: \2900000 、 Indirect Cost:\870000 )

    To elucidate the ‘vital effect’ of carbon stable isotope recorded in coral skeleton, carbon isotope module for incorporating to the coral polyp model which was already developed by Nakamura et al. (2013) was developed. The results of this model simulation were suggested that the vital effect of the carbon isotope is occurred by that the CO2 derived f. rom coral respiration was used calcification. Moreover similar annual patterns of δ13C in coral skeleton were reproduced by this model. This annual patterns are caused mainly by annual fluctuation of δ13C values in the coral tissue which are occurred by photosynthetic activity related to annual variation of the solar irradiance.

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  • Application of oxygen isotope systematics of dissolved phosphate to the study of biological production and phosphorus cycling in coastal marine ecosystems

    Grant number:25550010  2013.4 - 2017.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Challenging Exploratory Research  Grant-in-Aid for Challenging Exploratory Research

    Miyajima Toshihiro, UMEZAWA Yu, FERRERA Charissa M., MORIMOTO Naoko, KURIHARA Haruko, SAN DIEGO-MCGLONE Maria Lourdes, NAKAMURA Takashi

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    Grant amount:\3900000 ( Direct Cost: \3000000 、 Indirect Cost:\900000 )

    The oxygen isotope systematics of dissolved phosphate was introduced for the first time as a novel technique to elucidate the dynamics and the provenance of one of the most important eutrophication agent, dissolved orthophosphate, in tropical coastal marine ecosystems. The magnitudes of isotope fractionation associated with phosphorus uptake by major primary producers such as hermatypic corals, seagrasses, seaweeds, and phytoplankton, were determined experimentally. It was demonstrated as a case study that the recycling from sediments of phosphate that had been accumulated by intensive mariculture activities during preceding decades is the principal cause for sustained eutrophication and extremely low N:P ratios observed in a coastal embayment of Bolinao, northern Philippines.

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  • Blue carbon dynamics and global environmental impact prediction in coral triangle island-studded area

    Grant number:25257305  2013.4 - 2016.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (A)  Grant-in-Aid for Scientific Research (A)

    Nadaoka Kazuo, NAKAMURA TAKASHI, WATANABE ATSUSHI, MIYAJIMA TOSHIHIRO

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    Grant amount:\48490000 ( Direct Cost: \37300000 、 Indirect Cost:\11190000 )

    Conducting international joint studies in Indonesia and Philippines, where blue carbon in coastal ecosystems has been rapidly decreasing due to degradation of the ecosystem, we could clarify carbon dynamics and associated ecosystem characteristics and material cycles in blue carbon ecosystems consisting of mangroves, seagrass and others in the joint study areas. We conducted also the development of various simulation models to analyze and predict blue carbon dynamics in an integrated atmosphere-land-ocean system, and remote sensing analyses. Based on all these results, we succeeded in developing a model system which would enable the future prediction of the changes in the carbon dynamics and the decrease in the blue carbon stock under global warming and other anthropogenic impacts.

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  • Integrated system analysis of community structure, material cycle and ecosystem response processes for ecosystem conservation in subtropical islands

    Grant number:24246086  2012.4 - 2015.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (A)  Grant-in-Aid for Scientific Research (A)

    NADAOKA KAZUO, MIYAJIMA Toshihiro, NAKANISHI Yasuhiro, NAKAMURA Takashi, WATANABE Atsushi

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    Grant amount:\46930000 ( Direct Cost: \36100000 、 Indirect Cost:\10830000 )

    As a ‘comparative island study’, we conducted socio-economic surveys on livestock and tourism industry sectors for Ishigaki, Miyako and Yoron Islands in Japan and found that the structural features of the generation of environmental loads in each sector. We examined possible ways for controlling the environmental load generation based on the results of the surveys and a material flow analysis on the nitrogen from cattle farms. We made also various field measurements to clarify the propagation and material cycle processes of the environmental loads through surface and ground water flows and atmospheric precipitation. Moreover we developed computational models to quantitatively describe and predict the responses of coral reef and mangrove ecosystems under multiple environmental stresses.

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  • Elucidation of the calcification mechanism inside the hermatypic corals

    Grant number:22740336  2010 - 2012

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Young Scientists (B)  Grant-in-Aid for Young Scientists (B)

    NAKAMURA Takashi

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    Grant amount:\4030000 ( Direct Cost: \3100000 、 Indirect Cost:\930000 )

    To clarify calcification mechanism of hermatypic corals, a coral polyp model under more realistic and comprehensive assumptions on physical, chemical and physiological processes was developed. The mechanism of “light-enhanced calcification” phenomenon was clarified by the model study, and the simulation result of the model well reconstructed the phenomenon. Moreover to shed light on the “vital effect” of the skeletal records of carbon stable isotope ratio, a carbon isotope module for the coral polyp model was developed and it was incorporated into the polyp model. The modified model reconstructed reasonable values and clear seasonal variations of skeletal carbon isotope ratio.

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  • サンゴ礁群集の造る帯状分布パターンの形成機構の解明と群集遷移モデルの構築

    Grant number:21121501  2009 - 2010

    日本学術振興会  科学研究費助成事業  新学術領域研究(研究領域提案型)

    中村 隆志

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    Grant amount:\4550000 ( Direct Cost: \3500000 、 Indirect Cost:\1050000 )

    サンゴ礁には様々な生物群集が生息し、それらは海岸とほぼ平行に帯状に分布している。この帯状分布は、岸から沖にかけての様々な物理・化学的な環境パラメータの勾配によって形成されていると考えられるが、その詳しい成因やメカニズムについてはまだ良く分かっていない。この環境勾配に伴ったこの空間的な群集の遷移メカニズムを理解することは、環境変動による時間的な群集遷移を理解する上でも重要である。そこで、本研究の目的は、サンゴ礁群集の帯状分布が、どのような物理・化学条件によって形成されるかを明らかにすることである。
    前年度は、今回サンゴ礁群集の分布がどのような環境パラメータによって規定されるかを検討するため、石垣島白保サンゴ礁域で礁を横断しながら海岸から50m~1000mまでを50m間隔で計6回採水を行い、温度、塩分、pH、アルカリ度および栄養塩類(全窒素、全リン、硝酸、亜硝酸、リン酸など)を測定した。また、平衡計算によりその他の炭酸系パラメータ(全炭酸、アラゴナイト飽和度、CO_2フガシティーなど)も求めた。本年度では、前年度に加えて、人為的な汚染が進んでいる轟川河口域にも測線を追加し、両測線のベルトトランゼクト法による群集調査と、両測線上50m間隔での採水を夏季4回、冬季4回行った。それらの結果、サンゴ礁生物群集は岸から沖に向かって帯状構造が確認されると供に、水温・塩分・栄養塩濃度等の環境パラメータは岸沖方向に明らかな勾配が生じていることが確認された。そこで、それらのデータを基に群集被度と環境パラメータとの関係を比較し、一般化線形モデルを用いて群集被度を環境パラメータの関数としてモデル化した。モデルにより再現された群集被度分布は、実際の被度の分布パターンを概ね良く再現することが確認された。

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